Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60434g00027 ATGATGCAAGAACAGCCAAGCTTGGGTATGATGGGGGCCGCCTTGGGAGGAGGAGACATGTCTTCAGCCGGCGACCACCAGCAACGACAGCTGAAGGCGGAGATAGCAACACACCCGCTGTACGAGCAGGTTCTGGCAGCACACGTGGCATGCCTGAGAGTGGCAACACCGATAGACCAGCTTCCTCTCATAGAAGCACAGCTCTCACAGTCACACCATGTTCTCCGCTCATACGTCTCTCAACACACTCACTCTCTCTCCCCTCACGACCGTCAAGACCTTGATAATTTCCTCGCACAATACTTGATCGTTTTGTGTACTTTCAAAGAGCAGCTTCAGCAGCATGTCAGAGTCCACGCCGTCGAGGCCGTCATGGCCTGCCGTGACATTGAAAATACCTTGCAAGCTCTCACCGGAGTGAGCTTGGGAGAAGGGAGTGGGGCAACAATGTCAGATGATGAAGATGAATTTCAGATGGATTTCTGTTTGGACCAGTCAAGTGGTGGTGGTGGTGGTGATGACATGATGGGATTTGGTCCCTTACTCCCAACTGAATCAGAAAGGTCACTCATGGAAAGAGTCCGTCAAGAACTGAAGATTGAGCTGAAGCAGGGATTCAAGTCAAGGATTGAAGATGTTAGGGAAGAAATCCTCAGGAAACGTAGAGCTGGCAAATTACCCGGTGATACCACTTCTGTCTTGAAGAACTGGTGGCAGCAGCATGCTAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTAGTGGAAGAGACAGGGTTGCAGCTCAAGCAAATCAACAATTGGTTCATCAACCAAAGAAAACGCAATTGGCACAGCAACTCTCAATCAGTTACCTCCCTCAAGTCCAAGCGCAAAAGGTAG 885 0.5006 MMQEQPSLGMMGAALGGGDMSSAGDHQQRQLKAEIATHPLYEQVLAAHVACLRVATPIDQLPLIEAQLSQSHHVLRSYVSQHTHSLSPHDRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEFQMDFCLDQSSGGGGGDDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60434g00027 294 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Stsc60434g00027 294 Pfam KNOX1 domain 31 72 IPR005540 GO:0003677|GO:0005634
Stsc60434g00027 294 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Stsc60434g00027 294 MobiDBLite consensus disorder prediction 1 27 - -
Stsc60434g00027 294 SMART KNOX1_2 29 73 IPR005540 GO:0003677|GO:0005634
Stsc60434g00027 294 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 61 281 - -
Stsc60434g00027 294 Gene3D - 216 290 - -
Stsc60434g00027 294 FunFam homeobox protein knotted-1-like 3 isoform X1 218 279 - -
Stsc60434g00027 294 Pfam KNOX2 domain 87 138 IPR005541 GO:0003677|GO:0005634
Stsc60434g00027 294 SUPERFAMILY Homeodomain-like 219 284 IPR009057 -
Stsc60434g00027 294 SMART KNOX2_2 84 139 IPR005541 GO:0003677|GO:0005634
Stsc60434g00027 294 CDD homeodomain 220 281 IPR001356 GO:0003677
Stsc60434g00027 294 SMART HOX_1 219 284 IPR001356 GO:0003677
Stsc60434g00027 294 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60434g00027 Stsc-Chr60434 139942 143804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60434g00027 2 293 Homeobox Transcription Factor Family AT1G62990 79.522 4.08e-172 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc60434g00027 KNOX2 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60434g00027 - - tpra:123907403 507.679