Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60434g00024 ATGGACACCTTCAGCAACAAACTTGGAGGCATGCTTTCCATGCTCCCTAACAAACTCGGAGGCAAAATCGAAGGCCACGTGTCACAGAACTTATCCACCAGTGATCCATATGTGACAGTGTCTGTCTCAGGTGCTGTAATAGCCAGAACTTTTGTCATCAGAAACTCTGAGAACCCTGTTTGGATGCAGCATTTCAATGCCCCTGTTGCTCATCATGCTGCAGAGGTTCACTTCGTTGTCAAGGACAGTGATTTCGTGGGGTCACAGATCATAGGTGCAGTTGGGATCCCAGTGGAAAGGTTATTACATGGTACAAAAGTTGAAGGCGTTTTCCCTATCCTTAATGCTAGTGGGAAGCCTTGTAAGCATGGAGCAGTGTTGAATTTGTCAATTCAGTACACACATGTTGATAAGGTTGCCCTTTATGGTAATGGTGTAGGTGCTGGTCCTAATTATGAAGGGGTCCCAGACACTTACTTTCCTCTTAGAAAGGGTGGAAGAGTTACACTGTATCAGGATGCTCATGTTCATGAAGGTTTCCTTAACAATTGTTGGGATGACATATTTGATGCAATAAGTGAGGCACGTAGATTGGTGTATATTGTTGGTTGGTCTGTTTACTACAATGTTGCTTTGATTAGAGGTACTAGAGGTGATGGAAAGGCTTGCACTTTAGGTGAACTTCTCAAAGCCAAATCACAGGAAGGTGTCAGAGTTTTGCTCCTTGTGTGGGATGATCCTACTTCTAATAGCTTCCTTGGTCAGAAAACGGTTGGACTAATGGACACTCATGATGAGGACACCCGCCATTTCTTCAAGCACTCCTCCGTACGAGTGCTTCTTTGCCCAAGATCTGGTGGAAAAGGACATAGTTTGCTCAAAACACAGGAAGCTGGGACGATCTATACTCATCACCAAAAGACTGTCATTGTGGATGCTGATGCAGGGCACCATAAAAGAAAGATTGTAGCTTTCATAGGAGGACTTGATTTATGTGTTGGAAGATATGATACACCAGAACATTCTCTCTTTAGGACTTTGAAGACAACTCACAAAGATGACTTTCATAATCCTAACTTTAAGGGGCCTGTTACTGGGTGTCCAAGAGAACCATGGCATGATTTGCACTCAAGAATTGATGGTCCAGCAGCATATGACATCCTGACCAATTTTGAGGAGCACATTCTTGGGATTGATGAAGTAACTAGCCTTGATGGTGAACATAACCGTGAGACTTGGCATGTTCAGGTCTTCCGTTCAATTGATTCCAATTCTGTGAAAGGATTTCCCAAGGAACCTAATGATGCTATAAGAAGGAACTTGGTTTGTGGAAAGAATGTAATGATAGACATGAGCATACATTCTGCATATGTCAAGGCAATCAGATCTGCCCAAAATTTCATATATATTGAGAACCAATACTTTCTTGGATCATCATATAATTGGGATTCTCACAAAGACCTTGGTGAGTAA 1473 0.4257 MDTFSNKLGGMLSMLPNKLGGKIEGHVSQNLSTSDPYVTVSVSGAVIARTFVIRNSENPVWMQHFNAPVAHHAAEVHFVVKDSDFVGSQIIGAVGIPVERLLHGTKVEGVFPILNASGKPCKHGAVLNLSIQYTHVDKVALYGNGVGAGPNYEGVPDTYFPLRKGGRVTLYQDAHVHEGFLNNCWDDIFDAISEARRLVYIVGWSVYYNVALIRGTRGDGKACTLGELLKAKSQEGVRVLLLVWDDPTSNSFLGQKTVGLMDTHDEDTRHFFKHSSVRVLLCPRSGGKGHSLLKTQEAGTIYTHHQKTVIVDADAGHHKRKIVAFIGGLDLCVGRYDTPEHSLFRTLKTTHKDDFHNPNFKGPVTGCPREPWHDLHSRIDGPAAYDILTNFEEHILGIDEVTSLDGEHNRETWHVQVFRSIDSNSVKGFPKEPNDAIRRNLVCGKNVMIDMSIHSAYVKAIRSAQNFIYIENQYFLGSSYNWDSHKDLGE 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60434g00024 490 FunFam Phospholipase D delta 177 411 - -
Stsc60434g00024 490 SUPERFAMILY Phospholipase D/nuclease 158 394 - -
Stsc60434g00024 490 Gene3D C2 domain 18 141 IPR035892 -
Stsc60434g00024 490 SUPERFAMILY Phospholipase D/nuclease 453 483 - -
Stsc60434g00024 490 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 31 136 IPR035892 -
Stsc60434g00024 490 PANTHER PHOSPHOLIPASE D 29 489 IPR015679 -
Stsc60434g00024 490 Gene3D Endonuclease Chain A 171 397 - -
Stsc60434g00024 490 Pfam Phospholipase D Active site motif 301 335 IPR001736 GO:0003824
Stsc60434g00024 490 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Stsc60434g00024 490 SMART C2_3c 20 110 IPR000008 -
Stsc60434g00024 490 CDD C2_plant_PLD 1 134 - -
Stsc60434g00024 490 Pfam C2 domain 31 113 IPR000008 -
Stsc60434g00024 490 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 300 335 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60434g00024 Stsc-Chr60434 135888 138278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60434g00024 1 489 Phospholipase D Gene Family (Wang group) AT2G42010 65.472 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60434g00024 K01115 - gmx:100786241 794.653