Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60434g00023 ATGATTTATGTTCATTCAAAAGGAATGATCGTGGATGATGAGTATGTGTTGCTGGGTTCTGCAAACATAAACCAGAGATCAATGGAAGGCACCAGAGACACAGAGATAGCAATGGGAGCATATCAGCCTCATCATACCAGTGCAACAAACCGGTCTAAACCCCGTGGCCAGGTGCATGGCTACAGAATGTCATTGTGGAAGGAGCATATTGGAGGATTGGAAGCTTGTTTCGAGCATCCAGAGAGCCTCGAATGCGTGAGACGTGTAAGATCATTGAGTGAGAATAACTGGAGACAGTTTGCAGCTGATGAAGTAACCGAAATGAAGAGCCATCTGTTGAAGTACCCTGTTCATGTTGATTCAAAGGGCAATGTAAGATCCCTTCCTGGCTCGGAAACATTCCCTGATCTTGGTGGCAACATAACCGGCAACTTCACCCTACTGCAAGAAAATCTCACCATCTGA 465 0.4559 MIYVHSKGMIVDDEYVLLGSANINQRSMEGTRDTEIAMGAYQPHHTSATNRSKPRGQVHGYRMSLWKEHIGGLEACFEHPESLECVRRVRSLSENNWRQFAADEVTEMKSHLLKYPVHVDSKGNVRSLPGSETFPDLGGNITGNFTLLQENLTI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60434g00023 154 PANTHER PHOSPHOLIPASE D 1 143 IPR015679 -
Stsc60434g00023 154 Pfam Phospholipase D Active site motif 1 27 IPR001736 GO:0003824
Stsc60434g00023 154 SUPERFAMILY Phospholipase D/nuclease 2 85 - -
Stsc60434g00023 154 Pfam Phospholipase D C terminal 75 144 IPR024632 -
Stsc60434g00023 154 SMART pld_4 1 27 IPR001736 GO:0003824
Stsc60434g00023 154 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1 27 IPR001736 GO:0003824
Stsc60434g00023 154 Gene3D Endonuclease Chain A 2 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60434g00023 Stsc-Chr60434 134823 135287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60434g00023 1 154 Phospholipase D Gene Family (Wang group) AT2G42010 72.727 2.49e-79 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60434g00023 K01115 - gmx:100786241 265.003