Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60434g00012 ATGAATATTCATAATCACCATCATCATCATCACTCGGACGATGAAGTGCTTTTGGCTTCTTCGATGCCGAAGAAGAGAGCGGGGAGGAGGGTGTTCAAGGAGACAAGGCACCCAGTGTACAGGGGAGTGCGGAGGAGGAACAACAACAAGTGGGTTTGCGAGATTCGTGTTCCCAACGATGTTAACAATTCAAGGATATGGCTTGGAACATATCCTACACCTGAAATGGCAGCACGTGCACACGACGTTGCTGCTCTTGCGCTCCGCGGCAAGTCCGCCTGCCTCAACTTTTCTGACTCCGCTTGGCGCTTGCAACTTCCGCCTTCCACCGAACCAGAGGAAATTAGGAGGGCCGCAGTTGAGGCTGCGGCGGCATTTGCGGCAGAAGGCAGTTCCCTGCAGGAGGAGCAAGAAAAGAGTGTTGGGGAGTGCATTGTGGGAACTGAAGAGGATGAGAAGAAGGGTGGTGTTGATGAGCGAGATATATTTGAGGTGAATGTTCCGGCGGTTTCTGAAGAAAGTGAGGATTATTGGCATGATTTGGTTATGAGCATGGCGGACGAGCCGCTAAGGTCTCCTCCTCCTCCTTTTGCGAGAGATTGGAGTAGGGACATGAATGACGTGGAGATATTCGATGTTGGGCTACCACTCTGGAGTTTCTCAATTTGA 669 0.5127 MNIHNHHHHHHSDDEVLLASSMPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEIRVPNDVNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFSDSAWRLQLPPSTEPEEIRRAAVEAAAAFAAEGSSLQEEQEKSVGECIVGTEEDEKKGGVDERDIFEVNVPAVSEESEDYWHDLVMSMADEPLRSPPPPFARDWSRDMNDVEIFDVGLPLWSFSI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60434g00012 222 ProSiteProfiles AP2/ERF domain profile. 39 98 IPR001471 GO:0003700|GO:0006355
Stsc60434g00012 222 Gene3D AP2/ERF domain 39 99 IPR036955 GO:0003700|GO:0006355
Stsc60434g00012 222 FunFam Ethylene-responsive transcription factor 2 38 99 - -
Stsc60434g00012 222 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Stsc60434g00012 222 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Stsc60434g00012 222 Pfam AP2 domain 38 90 IPR001471 GO:0003700|GO:0006355
Stsc60434g00012 222 SMART rav1_2 39 104 IPR001471 GO:0003700|GO:0006355
Stsc60434g00012 222 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 219 IPR045277 GO:0003700
Stsc60434g00012 222 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Stsc60434g00012 222 SUPERFAMILY DNA-binding domain 39 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60434g00012 Stsc-Chr60434 66941 67956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60434g00012 13 220 AP2-EREBP Transcription Factor Family AT1G63030 47.442 1.36e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc60434g00012 AP2 5.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60434g00012 - - gmx:100789097 225.713