Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60434g00011 ATGGCTTCATCATCATCTTCAAAGAGGCACCCTGTGTATCATGGGATCAGGTGTCGAGGAGGCAAATGGGTCTCCGAAATCCGGCAGCCACGTCAAGCTTCAAGGATATGGTTGGGGACGTTCCCCACGGCTGAGATGGCGGCTGCCGCCTACGACGTTGCGGCATTAGCACTGAAAGGCGACAGCACCGTTCTCAACCTTCCTGAGTCAGTTGGGAAGTACCAAATTCCTGTAACTAACTCCCCTGAAGACATCCGCAGAGCTGCGGCTGCGGCCGCTGCCTTGATGAAGAAGAAGCCTCATCAAGAAGAACCAACCACCACTCCTCGTATTATTGCTGTTAATAATGATAATAACATTGTTGATGATGTCACTAATAATAACAACAATAGTATTATAACTACGACTTTGTGTTTATCATCATCATCATGGTATGATGGGAATGATTTCATGGACGAGGAAGCTGTATTCCGTATGCCAAGTTTGCTGGTGGATATGGCTGAGGGGATGCTTCTGTCTCCGCCGAGAATAATACTGAGCCCGTCGCCGCCATCCTACAACTCAGGTGACGGTGGAGACAGTCTATGGAGTTACTACTTTTGA 603 0.4842 MASSSSSKRHPVYHGIRCRGGKWVSEIRQPRQASRIWLGTFPTAEMAAAAYDVAALALKGDSTVLNLPESVGKYQIPVTNSPEDIRRAAAAAAALMKKKPHQEEPTTTPRIIAVNNDNNIVDDVTNNNNNSIITTTLCLSSSSWYDGNDFMDEEAVFRMPSLLVDMAEGMLLSPPRIILSPSPPSYNSGDGGDSLWSYYF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60434g00011 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 198 IPR045277 GO:0003700
Stsc60434g00011 200 CDD AP2 13 70 IPR001471 GO:0003700|GO:0006355
Stsc60434g00011 200 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Stsc60434g00011 200 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Stsc60434g00011 200 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Stsc60434g00011 200 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Stsc60434g00011 200 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60434g00011 Stsc-Chr60434 62606 63208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60434g00011 7 198 AP2-EREBP Transcription Factor Family AT5G52020 46.701 7.60e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60434g00011 AP2 2.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60434g00011 - - gmx:100811020 186.037