Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60433g00040 ATGGGAGAGCCAAGAACACCAAGCTCTGAAACAGAAACTGAAAGAAGCACTACCACATGTGCTTCAGCTTCACCACCAACAACACCAACTCCCACATCGAAAAAGAATAACAAGCGATCAAGGCAGCAAAATAATAGTAATAATGATAATGGTGCTACGAAGCACCCTGTATACAGAGGGGTGAGAATGCGCACGTGGGGAAAATGGGTCTCCGAAATTCGTGAGCCACGCAAGAAGAGCCGCATCTGGCTCGGAACCTTCGCCACCGCCGACATGGCAGCGCGTGCACACGATGCCGCCGCTCTCACCATCAAAGGCTCCTCCGCCATCCTCAACTTCCCTCATCTCGCCCACACTCTCCCCCGCCCCGCCTCCAACTCCCCCCGCGACGTCCAGGCCGCCGCCGCCAAAGCCGCCGCAATGACTATTCCCCCTCCTCCTCCTTCTCCTTCTCCTCCTTCTCCACCACCGCCCGAGGATAACGAATCATCTTCCTCTTCCGCCGCCGCCGCCTCGGAAGAGGAGGAGGAGCTCGGCGAGATCGTGGAGCTTCCTCCGCTTGGAAACAGTTTCGAAGATCCGAACGATCTTGATCAGTTGGTGTTCTTTGATCCGTTTGATGGTAACTGTTTCTGTTACCCTTGGAATCAGGGAAGCATTTATGATCATGATTCTGATGGCTGCTTCATTAATAATAACAATAATAATCATAATCATAATCATAACAGTAATAACAGCAGCATCATGATGTCAATGCTGCTTGAATCAGCAGATTCTCTTCTTGCTTCTTCTTCTACTTATTCTCATTCTATTTCTAATAATTCTGATTCTTCTTCTTCTGATGGCTTTCAATTTTCTCTCTGGCAACATTAA 873 0.4937 MGEPRTPSSETETERSTTTCASASPPTTPTPTSKKNNKRSRQQNNSNNDNGATKHPVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATADMAARAHDAAALTIKGSSAILNFPHLAHTLPRPASNSPRDVQAAAAKAAAMTIPPPPPSPSPPSPPPPEDNESSSSSAAAASEEEEELGEIVELPPLGNSFEDPNDLDQLVFFDPFDGNCFCYPWNQGSIYDHDSDGCFINNNNNNHNHNHNSNNSSIMMSMLLESADSLLASSSTYSHSISNNSDSSSSDGFQFSLWQH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60433g00040 290 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Stsc60433g00040 290 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Stsc60433g00040 290 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Stsc60433g00040 290 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Stsc60433g00040 290 MobiDBLite consensus disorder prediction 1 59 - -
Stsc60433g00040 290 MobiDBLite consensus disorder prediction 11 53 - -
Stsc60433g00040 290 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Stsc60433g00040 290 MobiDBLite consensus disorder prediction 141 160 - -
Stsc60433g00040 290 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Stsc60433g00040 290 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Stsc60433g00040 290 MobiDBLite consensus disorder prediction 121 179 - -
Stsc60433g00040 290 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Stsc60433g00040 290 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Stsc60433g00040 290 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 37 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60433g00040 Stsc-Chr60433 261309 262181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60433g00040 34 219 AP2-EREBP Transcription Factor Family AT5G11590 53.158 1.37e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60433g00040 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60433g00040 K09286 - gmx:100804801 174.866