Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60433g00020 ATGTTAATGGGTGCTGTTGGGGCAATTGGAGATGGAATGTCCACAAACATTCTTCTCATCTTCGCCAGCAGAATCATGAACAGCTTAGGATATGGAAACCAACAACAAAGTAGTAGCAGTGACAACAACAACAATTACATGTCCCAGGTTGAAAAGTGCAGCTTGTATTTTGTGTACTTGGGACTAGCAGTGATGGTGGTGGCCTTCATGGAAGGGTACTGTTGGAGTAAAACAAGTGAGAGGCAGGTGTTGAGAATTCGGTACAAGTATTTGGAAGCTGTTCTAAGACAAGAAGTGGGGTTTTTTGAATCACAAGAAGCTACTACTTCTGAAATCATCAACTCCATATCAAAGGACACTTCTCTCATCCAAGAAGTCCTAAGTGAAAAGGTGCCACTATTCTTAATGCATTCATCATCATTCATCTCTGGGATTGCTTTTGCAACCTACTTCTCATGGAGACTGGCCTTAGTAGCATTCCCAACACTTGTTATTCTCATAATCCCTGGCATGATCTATGGCAAATACCTAATCTATTTGTCCAAGTCGTCCGCCAAGGAGTACGGCAAGGCGAACGCCGTCGTCGAGCAGGCCTTAAGCTCCATCAAAACAATTTACTCCTTCACCGCCGAGAGGAGAATCCTTGTGAGGTATTCAGAGACATTAGAGAGAACTTCAAGGCTTGGAATCAAGCAAGGTATAGCAAAGGGTTTAGCTGTTGGAAGCACAGGTTTGTGTTTTGGAATTTGGGCTTTTCTTGCTTGGTATGGAAGCCATTTGGTTATGTACAAAGGTGAAAGTGGTGGAAGGATCTATGCTGCTGGAATTTGCTTCATTATGAGTGGACAATCCCTTGGAGTGGTACTTCCAGATTTGAAGTACTTGACAGAAGCATCAGTAGCATCCACAAGAATCTTCAACATGATTGACAGAACACCCTTAATTGATGGAGAAGAGACAACAAAGGGAACAGTACTAGACCAGATCAATGGGAACCTAGACTTTGAACATGTGAGGTTCACATACCCATCAAGACCAGACAACCTAGTACTGAATGACTTCAATCTGAGAGTTGAATCAGGGAAAACGGTTGCACTTGTCGGTGCAAGTGGGAGTGGTAAGTCAACGGCAATAGCATTGTTGCAAAGATTCTATGATGTGGATGAAGGTGTTGTGAGGGTTGATGGTGTTGACATAAAGAGGTTGCAGTTGAAGTGGTTGAGGGGTAAAATGGGGCTTGTGAGTCAAGAACATGCATTGTTTGGGACATCAATTAAGGAGAATATTATGTTTGGGAAGCTTGATGCTACCATGGATGAGATTGTTGCTGCTGCCACTGCTGCTAATGCTCATAACTTCATTAGGCACCTCCCTAACGGTTATGAAACCAAGATTGGGGAAAGAGGAGCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATCATAAAGAACCCAGTGATTTTGCTTCTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCTGAATTACTTGTCCAAAATGCCCTTGATCAAGCCTCATTGGGCAGGACTACATTGGTTGTTGCACACAAGTTGTCAACTGTCCGAAATGCAGACCTCATAGCAGTTGTCAATGGCGGTTCAGTCATGGAAACCGGCACGCATAACGAGCTCATAACCCGTCCGGATGGCCACTATGCAAAGCTAGCAAAACTCCAGACACAATTCAGCTTTGATGAGCAACAAGATATCTCATCAAATGCTCTTTCTTCTGCAGCAAGAAGCAGTGCTGGTAGAACCAGATCAACAAGCCCTGCAATTTTCCAAAAATCACCAATCCTTGGTGATGATAACAACACCATAATAGCCACAGAATCATCATCTCTTGTTTCTCATCACCCTACTCCTTCTTTTACAAGGCTTCTATCTCTCAATGCACCTGAATGGAAACGAGGTTTGATTGGTACTATCTCTGCCATAGCTTTCGGCTCAGTGCAACCCATATATGCCTTAACAATTGGTGGCATGATTTCTGCATTTTTCGCTGAAAGCCATGGCGAAATGATTCACAGAATCAGGACATACTCTTTGATCTTCACTTCTCTTTCTGTTGCTTCCATCACACTCAACCTATTGCAGCACTACAATTTCGCATACATGGGGGCAAAGCTAACAAAAAGGATAAGGCAGAGAATGCTTGAGAATATATTAACATTCGAAACGGCATGGTTCGATGAAGAACATAATTCCAGTGGAGCCTTGTGCTCAAGGTTAAGCAATGAGGCTTCCATGGTTAAGTCCCTTGTCGCCGACCGCATTTCATTGCTGGTTCAAACAGCTTCTGCTGTCAGCATTGCAATGATCATAGGACTCGCGGTGGCGTGGAAGCTAGCTCTTGTGATGATAGCAGTGCAACCACTCACAATCCTATGCTTCTACACAAGAAAAGTTCTACTCTCAACACTCTCAACAAAATTCATCAAGGCACAGAATCATAGCACACAGATTGCAGTTGAAGCAGTGTACAATCACAGAATTGTGACTTCATTTGGAAGCATACAAAAGGTTTTAACATTATTCGATGAAGCGCAGGAGGCGCCGAGGAAGGAGGCTAGGAAGAAGTCATGGCTGGCTGGGATTGGAATGGGGTCTGCTCAATGCCTAACTTTCATGACATGGGCTTTGGATTTCTGGTATGGAGGGACATTGGTGGAGAAGAAGGAGATTTCTTCAGGGGATGTGTTTAAGACATTCTTTGTTTTGGTTAGCACTGGGAAGGTCATTGCTGAAGCTGGAAGCATGACTTCTGATCTTGCAAAGAGCTCTACTGCTGTCAAATCTGTGTTTGAGATTCTTGACAGGAAATCACTTATTCCCAAGGCTGGAGATTGCAACAATGGAAGAAAGTTGGAAAGTATGAGTGGGAAGATAGAATTAAAGAATGTTGATTTTGCATATCCAAGCAGGGCAGGGGCGCCCATATTGCGCAAGTTTTGTTTGGAGGTGAAGGCAGGGAAGAGTATTGGGCTAGTTGGGAAGAGTGGTTGTGGAAAATCAACAGTGATTGCATTGATCCAAAGATTCTATGATGTTGAGAGAGGGTTTGTGAAAGTGGACAATGTAGACATAAGGGAACTAGATATTCAGTGGTACAGGCAGCACACTGCACTTGTTAGCCAAGAACCTGTCATATATTCTGGCACCATAAGAGATAACATCTTGTTTGGTAAGCAAGATGCAACTGAGAATGAAGTTGTTGAAGCCGCAAAAGCAGCAAATGCTCACGAGTTCATATCATCACTAAAGGATGGATATGGAACAGAATGTGGAGAAAGGGGAGTACAACTGTCTGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCCATAATAAGGAACCCAACAATATTGTTGCTAGATGAAGCAACAAGTGCACTTGATGTTCAATCAGAACAAGTTGTGCAAGAAGCATTAGACAGGATCATGGTGGGGAGAACCACCATTGTTGTGGCACATAGGCTCAACACTATCAAAGAACTAGACTCTATTGCTTATGTCTCAGAGGGTAAGGTTCTTGAGCAAGGAACCTATGCTCAACTTAGGCACAAAAGGGGTGCCTTCTTCAACCTTGCATGCAATCAAATCCAAAATTAA 3648 0.4339 MLMGAVGAIGDGMSTNILLIFASRIMNSLGYGNQQQSSSSDNNNNYMSQVEKCSLYFVYLGLAVMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFESQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGIAFATYFSWRLALVAFPTLVILIIPGMIYGKYLIYLSKSSAKEYGKANAVVEQALSSIKTIYSFTAERRILVRYSETLERTSRLGIKQGIAKGLAVGSTGLCFGIWAFLAWYGSHLVMYKGESGGRIYAAGICFIMSGQSLGVVLPDLKYLTEASVASTRIFNMIDRTPLIDGEETTKGTVLDQINGNLDFEHVRFTYPSRPDNLVLNDFNLRVESGKTVALVGASGSGKSTAIALLQRFYDVDEGVVRVDGVDIKRLQLKWLRGKMGLVSQEHALFGTSIKENIMFGKLDATMDEIVAAATAANAHNFIRHLPNGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVNGGSVMETGTHNELITRPDGHYAKLAKLQTQFSFDEQQDISSNALSSAARSSAGRTRSTSPAIFQKSPILGDDNNTIIATESSSLVSHHPTPSFTRLLSLNAPEWKRGLIGTISAIAFGSVQPIYALTIGGMISAFFAESHGEMIHRIRTYSLIFTSLSVASITLNLLQHYNFAYMGAKLTKRIRQRMLENILTFETAWFDEEHNSSGALCSRLSNEASMVKSLVADRISLLVQTASAVSIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFIKAQNHSTQIAVEAVYNHRIVTSFGSIQKVLTLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGTLVEKKEISSGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVKSVFEILDRKSLIPKAGDCNNGRKLESMSGKIELKNVDFAYPSRAGAPILRKFCLEVKAGKSIGLVGKSGCGKSTVIALIQRFYDVERGFVKVDNVDIRELDIQWYRQHTALVSQEPVIYSGTIRDNILFGKQDATENEVVEAAKAANAHEFISSLKDGYGTECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLACNQIQN 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60433g00020 1215 CDD ABC_6TM_Pgp_ABCB1_D2_like 640 956 - -
Stsc60433g00020 1215 SUPERFAMILY ABC transporter transmembrane region 2 316 IPR036640 GO:0005524|GO:0016020
Stsc60433g00020 1215 ProSitePatterns ABC transporters family signature. 472 486 IPR017871 GO:0005524|GO:0016887
Stsc60433g00020 1215 Pfam ABC transporter 351 500 IPR003439 GO:0005524
Stsc60433g00020 1215 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 651 938 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60433g00020 1215 SUPERFAMILY ABC transporter transmembrane region 638 952 IPR036640 GO:0005524|GO:0016020
Stsc60433g00020 1215 Pfam ABC transporter 996 1142 IPR003439 GO:0005524
Stsc60433g00020 1215 Gene3D - 331 589 IPR027417 -
Stsc60433g00020 1215 PANTHER ABC TRANSPORTER B FAMILY 1 697 IPR039421 -
Stsc60433g00020 1215 CDD ABC_MTABC3_MDL1_MDL2 975 1212 - -
Stsc60433g00020 1215 SMART AAA_5 1002 1194 IPR003593 GO:0016887
Stsc60433g00020 1215 SMART AAA_5 360 646 IPR003593 GO:0016887
Stsc60433g00020 1215 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 975 1211 IPR003439 GO:0005524
Stsc60433g00020 1215 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 333 569 IPR003439 GO:0005524
Stsc60433g00020 1215 FunFam ABC multidrug transporter SitT 965 1214 - -
Stsc60433g00020 1215 FunFam ABC transporter B family member 4 323 580 - -
Stsc60433g00020 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 966 1212 IPR027417 -
Stsc60433g00020 1215 Gene3D - 965 1215 IPR027417 -
Stsc60433g00020 1215 FunFam Putative ABC transporter B family member 8 615 960 - -
Stsc60433g00020 1215 FunFam ABC transporter B family member 1 1 331 - -
Stsc60433g00020 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 571 IPR027417 -
Stsc60433g00020 1215 CDD ABC_MTABC3_MDL1_MDL2 334 571 - -
Stsc60433g00020 1215 MobiDBLite consensus disorder prediction 587 609 - -
Stsc60433g00020 1215 Pfam ABC transporter transmembrane region 651 921 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60433g00020 1215 Pfam ABC transporter transmembrane region 7 264 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60433g00020 1215 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 2 297 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60433g00020 1215 ProSitePatterns ABC transporters family signature. 1114 1128 IPR017871 GO:0005524|GO:0016887
Stsc60433g00020 1215 Gene3D ABC transporter type 1, transmembrane domain 55 881 IPR036640 GO:0005524|GO:0016020
Stsc60433g00020 1215 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60433g00020 Stsc-Chr60433 124016 135332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60433g00020 41 571 Calmodulin-binding Proteins AT2G36910 35.955 5.03e-102 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60433g00020 K05658 - gmx:100801088 1982.99