Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60432g00030 ATGGGTGGAGAGAACGGTGTAGATGAGAAAGAGAAGAGTAAGAATAATAAAAGTGATGAGGAGGCAAACACATCAGAGAATCAGGGAGAAGGAAAAAGCGCCAACGGTGAAAAGGATGGGAAGAAGAAGAAGAAAAATGACAAGTCCGAAACGGTGCCGTTTTACAAGCTGTTCCACTTTGCAGACTCCTCAGACATTCTTTTGATGGTAACTGGAACAGTTGGTGCCATTGGGAACGGTATGGGTTTGCCTCTCATGACTCTTCTCTTTGGTCAAATGATTGATAGCTTCGGTTCTAACCAGAAAAATCCTGAAGTAGTGCAAGAAGTTTCCAAGGTTGCATTAAAATTTGTGTACTTGGCAATTGGAAGTGGGGTGGCAGCGTTCCTCCAGGTTAGTTGCTGGATGGTCACAGGAGAGAGACAAGCAGCAAGAATCAGGGGATTGTATTTGAAAACTATATTGAGACAAGATGTTGCTTTCTTTGATAAAGAAACAAACACAGGTGAGGTTGTTGGCAGGATGTCCGGTGACACTGTTCTCATTCAAGATGCCATGGGTGAGAAGGTTGGAAAGTTTATTCAGCTAGTAGCAACATTTATTGGTGGATATATGATTGCCTTTATCAAAGGGTGGCTTCTTACTGTTGTGATGTTGTCCACTCTTCCACTTCTTGGTGCTGCTGGTGCTGCTATGGCCATTGGCATAAGCAAGATGGCTACCAGAGGTCAAACTGCATATGCAAAAGCTGCACATGTTGTTGAACAAACTATTGGCTCAATAAGAACTGTTGCATCCTTTACAGGGGAAAAGCAAGCAGTATCTGATTATAAAAAGCATCTTGTGGAAGCCTACAAATCAGGATTACATGAAGGTTTCATGGAAGGGACAGGTATGGGCACAATGATGCTTTTTATCTTCTGTGGCTATGCTATGGCTGTATGGTTTGGCGCAAAGATGGTTATGGAAAAGGGATATAACGGCGGCACCGTGGTTAATGTCATCGTTGCTGTCTTAACAGCTTCCATGTCTCTTGGTCAGGCATCTCCTAGCATGAGCGCTTTCGCCGCAGGTCAGGCTGCGGCATATAAAATGTTTGAGACAATAGAGAGGAAGCCGGAGATAGACGCTTATGATCCGAATGGAAAAACATTGGAGGACATCCAAGGTGACATTATGTTAAGGGATGTTTGTTTCAGTTATCCATCAAGACCTGAGGAATTGATATTCAATGGACTGTCCCTTCATATACCGAGTGGCACCACCGCGGCTTTAGTCGGAGAAAGTGGAAGTGGGAAGTCCACAGTCATCAGTTTGATAGAAAGATTCTATGATCCACAAGCTGGTGAAGTCCTCATTGATGGCATTAACTTGAAAGAGTTTCAGCTTAGGTGGATCAGAGGAAAAATTGGCCTTGTTAGCCAGGAGCCAGTTCTGTTTGCTTCTAGCATTAGGGAGAACATTGCATATGGAAAGGAAGGAGCAACAATTGAAGAGATCAAATCCGCCTCTGAGCTCGCGAATGCTGCCAAGTTCATAGATAAATTGCCACAGGGATTGGACACAATGGTTGGTGAGCATGGTCTTCAGCTGTCCGGGGGACAGAAGCAGCGCATTGCCATTGCAAGAGCGATCCTGAAAGATCCGAGGATTCTGCTTCTAGACGAAGCCACGAGTGCGCTCGATGCAGAGTCTGAAAGGGTAGTGCAAGAGGCTCTAGACAGGATCATGGGCAACCGAACTACTGTTGTCGTGGCACATCGCCTGAGCACAGTGAGGAATGCTGATATGATTGCTGTGATTCATAGGGGGAAGATGGTTGAGCAAGGAACACACTCAGAATTGCTCAAGGATCCTGAGGGAGCTTACTCTCAGCTTATACGTTTACAAGAAGTAAACAAGGAATCAAAAGAAAATGCAGATCATCAAAGCAAGAATGAACTATCATCAGAGTCTTTTAGACAATCCAGTCAAAGGAAATCACTCCAAAGATCTATCAGCAGGGGATCATCCATTGGGAACAGCAGCCGCCACTCGTTTAATGTTTCATTCGGTTTGCCTACCGGAGTTAACGTCTCTGATCCTGACCATGAAGCCTTAGAAGCCAAGGAAAAAGCGCCGGAGGTTCCACTAATGCGCCTCGCCACCCTCAACAAGCCGGAGATTCCAGTTCTTATCATTGGATGTTTAGGAGCCATAGGAAATGGAGTCATATTTCCAATATTCGGCCTCTTCCTTTCCAGTGTCATCAAAACATTCTATGAGCCATTTCATGAGATGAGAAAGGACTCCAGGTTTTGGGCACTAATGTTTGTGATACTTGGCCTTGCATCATTTCTGGTGATTCCTATCCGGGCATACTTCTTTTCTGTGGCTGGATCAAAGTTGATTCGCCGTATAAGGTTATTATGTTTCGAGAAGGTTGTCAACATGGAAGTTGGTTGGTTTGATGAGCCAGAGAACTCGAGTGGCGCAGTCGGAGCGAGGCTCTCGGCCGATGCTGCATCCGTTCGCGCCCTTGTTGGGGATGCCCTTGGCCTCTTAGTTAATAACATAGCATGCGCTTTGGCTGGTTTAATCATTGCCTTTGTTGCAAGCTGGCAGTTGTCACTGATAGTTCTTGTCTTGATTCCCCTGATTGGTGTAAATGGTTATATTTCAGTGAAATTCATGAAAGGATTTAGTGCAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCAAATGATGCAGTTGGAAGCATAAGAACAGTTGCCTCATTCTGTGCTGAAGACAAGGTTTTGGAACTGTATAGGAAGAAATGTGAAGGCCCTATGAAAACAGGGATCAGACAAGGAGTGATTAGTGGATCAGGATTTGGCATTTCATTTTTCTTGCTGTTTTGTGTCTATGCAACAAGTTTCTATGCCGGAGCTAGGTTTGTGAAAGCAGGGAAGGCCACATTCTCAGACGTTTTCCGGGTTTTCTTTGCTTTAACTATGGCTGCTACTGGAGTATCCCAGTCAAGTTCCTTTGCCCCTGACTCAAGCAAAGCCAAGATAGCTGCTGCTTCCATATTTGGAATAATTGATAGGAAATCAAAGATAGATCCTAGTGATGAGTCCGGTAGAACCTTGGATACTGTCAAGGGTGATATCGAGATTCGACATTTAAGCTTTAGGTATCCATCTCGGCCGGATGTACAAATTTTCCGGGATCTCAACCTGGCTATCAATTCTGGCAAGACAGTGGCACTTGTTGGTGAAAGTGGAAGTGGGAAATCAACAGTGATATCATTGTTACAGAGATTTTATGAGCCAGAGTCAGGTGAAATCACACTAGATGGTGTGGAAATAAGGCAGTTACAGCTAAAGTGGTTAAGGCAACAAATGGGGCTTGTAAGCCAAGAACCAGTGTTGTTCAATGAATCCATCCGTGCAAATATAGCTTATGGAAAAGGTGGGAATGCAACTGAATCAGAAATCATAGCTGCTGCAGAATTGGCCAATGCTCATAGGTTCATCAGTGCCTTGCATCAGGGATATGAGACTATAGTGGGAGAGAGGGGAACCCAATTATCTGGTGGCCAAAAACAACGTGTGGCCATAGCACGTGCCATAATAAAAAGTCCAAAGATATTGCTATTAGATGAAGCAACAAGTGCATTAGATGCAGAGTCAGAAAGAGTTGTTCAAGATGCATTAGACAGAGTCATGGTCAACAGGACCACCGTGGTCGTCGCACACCGCTTGTCCACAATAAAAAACGCTGATGTTATTGCTGTGGTGAAGAATGGAGTTATAGTAGAGAAAGGAAGACATGAAACTTTGATTAATATTAAGGATGGCTTTTATGCTTCTTTGGTTCAACTTCACACTAGTGCTTCAACAGCCTAA 3879 0.4424 MGGENGVDEKEKSKNNKSDEEANTSENQGEGKSANGEKDGKKKKKNDKSETVPFYKLFHFADSSDILLMVTGTVGAIGNGMGLPLMTLLFGQMIDSFGSNQKNPEVVQEVSKVALKFVYLAIGSGVAAFLQVSCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVATFIGGYMIAFIKGWLLTVVMLSTLPLLGAAGAAMAIGISKMATRGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSDYKKHLVEAYKSGLHEGFMEGTGMGTMMLFIFCGYAMAVWFGAKMVMEKGYNGGTVVNVIVAVLTASMSLGQASPSMSAFAAGQAAAYKMFETIERKPEIDAYDPNGKTLEDIQGDIMLRDVCFSYPSRPEELIFNGLSLHIPSGTTAALVGESGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIRENIAYGKEGATIEEIKSASELANAAKFIDKLPQGLDTMVGEHGLQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMGNRTTVVVAHRLSTVRNADMIAVIHRGKMVEQGTHSELLKDPEGAYSQLIRLQEVNKESKENADHQSKNELSSESFRQSSQRKSLQRSISRGSSIGNSSRHSFNVSFGLPTGVNVSDPDHEALEAKEKAPEVPLMRLATLNKPEIPVLIIGCLGAIGNGVIFPIFGLFLSSVIKTFYEPFHEMRKDSRFWALMFVILGLASFLVIPIRAYFFSVAGSKLIRRIRLLCFEKVVNMEVGWFDEPENSSGAVGARLSADAASVRALVGDALGLLVNNIACALAGLIIAFVASWQLSLIVLVLIPLIGVNGYISVKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVLELYRKKCEGPMKTGIRQGVISGSGFGISFFLLFCVYATSFYAGARFVKAGKATFSDVFRVFFALTMAATGVSQSSSFAPDSSKAKIAAASIFGIIDRKSKIDPSDESGRTLDTVKGDIEIRHLSFRYPSRPDVQIFRDLNLAINSGKTVALVGESGSGKSTVISLLQRFYEPESGEITLDGVEIRQLQLKWLRQQMGLVSQEPVLFNESIRANIAYGKGGNATESEIIAAAELANAHRFISALHQGYETIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIKDGFYASLVQLHTSASTA 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60432g00030 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 392 628 IPR003439 GO:0005524
Stsc60432g00030 1292 FunFam ABC transporter B family member 9 56 389 - -
Stsc60432g00030 1292 FunFam ABC transporter B family member 1 705 1013 - -
Stsc60432g00030 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1047 1284 IPR003439 GO:0005524
Stsc60432g00030 1292 CDD ABC_6TM_Pgp_ABCB1_D1_like 69 353 - -
Stsc60432g00030 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 726 1012 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60432g00030 1292 Gene3D - 390 647 IPR027417 -
Stsc60432g00030 1292 FunFam ABC transporter B family member 1 382 631 - -
Stsc60432g00030 1292 FunFam ABC transporter B family member 9 1014 1036 - -
Stsc60432g00030 1292 Pfam ABC transporter 411 559 IPR003439 GO:0005524
Stsc60432g00030 1292 MobiDBLite consensus disorder prediction 634 675 - -
Stsc60432g00030 1292 ProSitePatterns ABC transporters family signature. 531 545 IPR017871 GO:0005524|GO:0016887
Stsc60432g00030 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 630 IPR027417 -
Stsc60432g00030 1292 Gene3D - 1037 1291 IPR027417 -
Stsc60432g00030 1292 Pfam ABC transporter 1066 1215 IPR003439 GO:0005524
Stsc60432g00030 1292 SMART AAA_5 419 605 IPR003593 GO:0016887
Stsc60432g00030 1292 SMART AAA_5 1074 1267 IPR003593 GO:0016887
Stsc60432g00030 1292 Pfam ABC transporter transmembrane region 725 996 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60432g00030 1292 Pfam ABC transporter transmembrane region 71 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60432g00030 1292 SUPERFAMILY ABC transporter transmembrane region 56 376 IPR036640 GO:0005524|GO:0016020
Stsc60432g00030 1292 ProSitePatterns ABC transporters family signature. 1187 1201 IPR017871 GO:0005524|GO:0016887
Stsc60432g00030 1292 SUPERFAMILY ABC transporter transmembrane region 713 1031 IPR036640 GO:0005524|GO:0016020
Stsc60432g00030 1292 CDD ABC_6TM_Pgp_ABCB1_D2_like 717 1030 - -
Stsc60432g00030 1292 PANTHER ABC TRANSPORTER B FAMILY 31 632 IPR039421 -
Stsc60432g00030 1292 MobiDBLite consensus disorder prediction 1 46 - -
Stsc60432g00030 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1037 1285 IPR027417 -
Stsc60432g00030 1292 CDD ABC_MTABC3_MDL1_MDL2 1047 1285 - -
Stsc60432g00030 1292 FunFam ABC transporter B family member 1 1037 1287 - -
Stsc60432g00030 1292 MobiDBLite consensus disorder prediction 634 648 - -
Stsc60432g00030 1292 MobiDBLite consensus disorder prediction 649 675 - -
Stsc60432g00030 1292 Gene3D ABC transporter type 1, transmembrane domain 115 1021 IPR036640 GO:0005524|GO:0016020
Stsc60432g00030 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60432g00030 1292 CDD ABC_MTABC3_MDL1_MDL2 392 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60432g00030 Stsc-Chr60432 230552 237616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60432g00030 52 1286 Calmodulin-binding Proteins AT2G36910 45.513 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60432g00030 K05658 - gmx:100800034 2074.67