Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60432g00022 ATGGCGAGCGGCAAAATAATCGTTTCTGGAGTTGCTATCATCCTTGTAGTTGGTGTTGTGATTGGCACCATTGGAATCATCAACAACAATAACAACAACAACAGCAACAATTTGAAGACCCACAACAAAGCAGTGGAGCAATTGTGCCAAAACGCAGATGACAAGAAACTTTGTCATGATGTTATTGGCAATGTCAATGGCACAGACCCGAAGGAGTACGTCTCAGAAGTGGTAAAGAGAACAATGGACACTGTCATCAAAGCTGCAAACATGAGTGATACTCTCTCCGTGGAGCATGCCAGTAGTACTAGTGAACCTGGTATGAAGATGGCTTTAGATGATTGTAAAGACTTATTGCAATCCGCGATGCACGAACTCGAGGCCTCTATCAACCTTGTCGGTGATAACAATTTCGCAAATGTTTATCAGAGTTCTGCAGAGCTCAAGAACTGGTTGGGTGCCGTCATTGCCTACCAGCAATCTTGCATGGATGGCTTCGACAGCGACGGCGAAAAGAAGGTTCAATCCCAGTTGCAGGCTGATAGCTTGGACAGTGTTGGCAAGTTCACAGCACTTGCTCTTGATGTTGTTTCCGGATTGTCCCACTTTCTTTCTGGTCTAGGCTTGAACTTGAACCTCAAGCCACCTTCCAGAAGACTCCTTGATGTAGATGAAGAAGGATATCCTACATGGATGTCGGCCGCAGATCGCAAACTCTTGCAAGACGGAGAAAACTTGAAGCCTAATGTTGTTGTTGCCCAGGATGGTAGTGGCCAATTTAAAACTGTTTTGGAGGGTATTAACTCTTACCCTAAGAACTTCCAAGGCAGATACGTTATCTATGTTAAAGCTGGTGTTTATGATGAATACATTACTGTTGACAAAAAGTTCAAGAACATGCTCATCTATGGTGATGGAAACACAAAAACCATTATCACTGGCCGCAAGAACTTCCATGAGGGTACTAAGACAATGAGAACCTCCACATTCTCCTCCAATGCTGATGATTTCATTGCCAAGTCAATTGCATTCGAGAACACAGCCGGTGCTGAAGGTCACCAGGCAGTGGCACTCCGCATCCAAGGTGACCGCTCAGCCTTCTTTGATTGCGCCATGCGTGGCTACCAAGACACACTTTATGCCCATGCTCATCGCCAGTTCTACCGCAACTGCGAAATCTCCGGTACCATCGACTTCATCTTCGGCTATGGCACCACCTTGATCCAAAACTCCAAGATCATCGTGAGGAAGCCTATGTCAAACCAGCAAAACATTGTGGTTGCTGACGGAACTGACCAGAAGAACATGCCTACCGGTATTGTCCTTCAAAATTGCGAGATCTTGGCCGCTCCTGAACTCTTCCCAGACAGGTTGACAGTGAGGACATTCTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATTGAGAACGAGATTGGTGATTTGATCCAGCCGCAAGGATACATTCCATGGAATCCACCGACCGAGGCTAACACTGACAATTGTTTCTTTGCTGAGTTTGCAAACACTGGACCTGGTTCCAATGCACAGGCCAGGGCACCCTTTGCAAAAGGAATTATTAGCAAGGATGAAGCTTCTCAATATCTTGCTGAGCCATGGATTCAAGCTAGCACTTGGGTCCCAGCCACCGGCATTGCTTATGATGCTGGCTTCACTAAGGCTTAA 1692 0.4634 MASGKIIVSGVAIILVVGVVIGTIGIINNNNNNNSNNLKTHNKAVEQLCQNADDKKLCHDVIGNVNGTDPKEYVSEVVKRTMDTVIKAANMSDTLSVEHASSTSEPGMKMALDDCKDLLQSAMHELEASINLVGDNNFANVYQSSAELKNWLGAVIAYQQSCMDGFDSDGEKKVQSQLQADSLDSVGKFTALALDVVSGLSHFLSGLGLNLNLKPPSRRLLDVDEEGYPTWMSAADRKLLQDGENLKPNVVVAQDGSGQFKTVLEGINSYPKNFQGRYVIYVKAGVYDEYITVDKKFKNMLIYGDGNTKTIITGRKNFHEGTKTMRTSTFSSNADDFIAKSIAFENTAGAEGHQAVALRIQGDRSAFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYGTTLIQNSKIIVRKPMSNQQNIVVADGTDQKNMPTGIVLQNCEILAAPELFPDRLTVRTFLARPWKAFSRAVFIENEIGDLIQPQGYIPWNPPTEANTDNCFFAEFANTGPGSNAQARAPFAKGIISKDEASQYLAEPWIQASTWVPATGIAYDAGFTKA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60432g00022 563 SMART PMEI_2 40 196 IPR006501 GO:0004857
Stsc60432g00022 563 Gene3D - 243 560 IPR012334 -
Stsc60432g00022 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 201 IPR035513 -
Stsc60432g00022 563 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Stsc60432g00022 563 Pfam Plant invertase/pectin methylesterase inhibitor 44 194 IPR006501 GO:0004857
Stsc60432g00022 563 CDD PMEI-like_3 48 201 - -
Stsc60432g00022 563 Pfam Pectinesterase 249 545 IPR000070 GO:0030599|GO:0042545
Stsc60432g00022 563 FunFam Pectinesterase 4 246 560 - -
Stsc60432g00022 563 SUPERFAMILY Pectin lyase-like 247 558 IPR011050 -
Stsc60432g00022 563 NCBIfam pectinesterase inhibitor domain 36 180 IPR006501 GO:0004857
Stsc60432g00022 563 PANTHER PECTINESTERASE 15 550 - -
Stsc60432g00022 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 195 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60432g00022 Stsc-Chr60432 154647 156424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60432g00022 6 560 Carbohydrate Esterase AT3G05610 37.852 9.22e-131 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60432g00022 K01051 - gmx:100808559 791.956