Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60432g00021 ATGGAACAGAGAAAGCTTGTTCCTGCAGTTTCTCTCTTTCTATTGGTGGGTGTTGCATTGGGCATTGTTGCGGTTGTCCGCCGCACCAACGACCAAGCCAGCGACACAACCGGCAACAAAAGTAGATTAAGCATACATAGCAAGGCTGTTACGGCCATGTGCCAAAACTCTGATGACCAAAGACTCTGCCTGGACACACTGAATTCGGTAAACAACACAGATCCTAAAGAGTACATATCAACGATTTTAAAGACCTCCATGGAAAGCGTCATCATGGCCTTTAACATGAGTGATAGGCTCACATTGGAGCATGGTAACAGCACCCCGGGGGTCAAGATGGCCCTCGACGACTGTAAAGACCTGCTCCAATTCGCCATAGGGGAGTTACAAGCCTCAAATCTTGTCGTACAGGACAACACACTCAACAACATAAACGATCGTGTCGACGACCTAAAGAATTGGTTGGGGGCGGTTTTTGCCTACCAACAATCATGCCTGGATGGGTTCCACACAGACGGCGAGAAGCAGGTCCAGTCGCAGTTACAAACCGGGAGTTTAGACCAGGTCGGAAAGCTTACAGGACTAGCCCTTGATGTTGTGTCTGCCGTTGCACAAGTGTTGTCGAATTTTGATTTAAACTTTATCGTGAAGCCTTCTTCTCGGCGCTTATTTGAGGTTGATAAAAATGGTTATCCGGGTTGGTTCAGTGTTAGAGATCGAAAGCTTTTGGGTGATGTCAGCCAGGGAGCTTCCATTACACCCAATGCAGTTGTTGCCAAAGATGGGAGCGGGCAATTTAAGACTGTTTTGGATGCTATTAATGCGTACCCTAAAAATAATCAGGGAAGATATGTTATCTATGTTAAGGCTGGGATTTATGATGAGTATATTACTGTGAATAAACACAAGAAAAATATTTTGATGTATGGAGATGGCCCCGACAAGACCATTATTACTGGTAGTAAAAATTTTGTTGATGGTTGGAAGACGATGAGAACTGCTACCTTTGCCACGGTTGCCGAAGATTTTGTGGCGAAGTCAATTGCATTCGAGAACACAGCCGGTGCAAGCAAACACCAAGCAGTGGCACTTCGCGTGCAAGGTGACCGCTCAGCTTTCTTCGACTGTGCCATTCGTGGCTACCAAGACACACTATATGCCCACGCCCACCGCCAGTTCTATTGCAACTGTGAAATCTCTGGTACAGTCGACTTCATCTTCGGTTATTCCTCAACCTTAGTCCAAAACTCCAAGATCATCATCCGAAAACCCGAACCAAACCAACAAAACATCGTGGTTGCAGATGGAACACCCCAGAAGAACATGCCTACAGGGGTAGTGCTACAAAATTGTGTGATTCTTCCAGAAGCTGAGCTTGTTCCTATGAAACTAACTGTGAAATCATATCTAGCGAGGCCATGGAAGGCGTATTCAAGGGCAATCTTCATGGAGAACGAAATTGGTGATTTGATTCAACCAGATGGGTATCTTCCATGGTCAGGGAATATGTACCTAGATACTTGCTTCTTTGCTGAGTATGGTAACACAGGACCAGGGGCTAATGTGAGAAGCAGAGTGAAGTGGGGTCATGGGGTTCTTAGTAAGAATGATGCTGTTCAGTACACTGCTGAACATTGGATTCAAGGTAGCCAATGGTTGCCATCTACTAGTATACCTTTTGATCCCGCCTTCACTGTACTAAAGGATGATGAGATGGTTATCAAGGGATAG 1731 0.4564 MEQRKLVPAVSLFLLVGVALGIVAVVRRTNDQASDTTGNKSRLSIHSKAVTAMCQNSDDQRLCLDTLNSVNNTDPKEYISTILKTSMESVIMAFNMSDRLTLEHGNSTPGVKMALDDCKDLLQFAIGELQASNLVVQDNTLNNINDRVDDLKNWLGAVFAYQQSCLDGFHTDGEKQVQSQLQTGSLDQVGKLTGLALDVVSAVAQVLSNFDLNFIVKPSSRRLFEVDKNGYPGWFSVRDRKLLGDVSQGASITPNAVVAKDGSGQFKTVLDAINAYPKNNQGRYVIYVKAGIYDEYITVNKHKKNILMYGDGPDKTIITGSKNFVDGWKTMRTATFATVAEDFVAKSIAFENTAGASKHQAVALRVQGDRSAFFDCAIRGYQDTLYAHAHRQFYCNCEISGTVDFIFGYSSTLVQNSKIIIRKPEPNQQNIVVADGTPQKNMPTGVVLQNCVILPEAELVPMKLTVKSYLARPWKAYSRAIFMENEIGDLIQPDGYLPWSGNMYLDTCFFAEYGNTGPGANVRSRVKWGHGVLSKNDAVQYTAEHWIQGSQWLPSTSIPFDPAFTVLKDDEMVIKG 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60432g00021 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 201 IPR035513 -
Stsc60432g00021 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 203 IPR035513 -
Stsc60432g00021 576 SUPERFAMILY Pectin lyase-like 253 560 IPR011050 -
Stsc60432g00021 576 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Stsc60432g00021 576 PANTHER PECTINESTERASE 19 556 - -
Stsc60432g00021 576 Pfam Pectinesterase 255 549 IPR000070 GO:0030599|GO:0042545
Stsc60432g00021 576 Pfam Plant invertase/pectin methylesterase inhibitor 49 197 IPR006501 GO:0004857
Stsc60432g00021 576 FunFam Pectinesterase 46 204 - -
Stsc60432g00021 576 Gene3D - 249 564 IPR012334 -
Stsc60432g00021 576 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Stsc60432g00021 576 NCBIfam pectinesterase inhibitor domain 43 181 IPR006501 GO:0004857
Stsc60432g00021 576 FunFam Pectinesterase 249 564 - -
Stsc60432g00021 576 CDD PMEI-like_3 52 204 - -
Stsc60432g00021 576 SMART PMEI_2 45 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60432g00021 Stsc-Chr60432 146939 148752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60432g00021 2 560 Carbohydrate Esterase AT3G05610 39.146 3.32e-141 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60432g00021 K01051 - gmx:100820142 817.764