Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60432g00003 ATGGATGGTAATGTTATTAAGAAAAGTGAAGAAGCAAACGAGATGGGCCTAAGAAAAGGTCCATGGACACTTGATGAGGACTCCATTCTCATCAATTACATCTCCACACACGGTTTGAAGAGAAGCGGTAAAAGTTGTAGATTAAGGTGGCTAAACTACTTGCGCCCGGACGTGCGCCGTGGAAATATCACTCTCCAAGAACAGATATTGATTCTTGACCTCCACTCTCGGTGGGGTAATAGGTGGTCAAAGATTGCTCAGCATCTGCCAGGAAGAACGGACAACGAAATCAAGAACTATTGGAGGACGAGGGTGATAAAGCAGGCAAAGCAGTTAAAGTGCGATGTAAACAGCAAGCAATTCAGAGACGCCTTGCGTTACGTGTGGATGCCGCGACTGCTCGAGAGGCTTCACCCTCAAACCGGAGTTCTTCTTTCTAACAACCACAACCGTTCTGATTCGGGACCTTTACTAAACCAGAGCAAGGACTCATCGTCTCGTCCTTCGAGTTCCGACGGGGAAGATTCGTCGGAACCGTTGGGACAGAGTGTAGGAAATGAATTGTCAAGTTTCAATAATCACTTGTTGTTTGAACTGGGGACAAATGGTGGTGGTGGTGAGTCACTAGAGGGTTTGTGGAACGATGAAAATATGTGGTTTTTGCAACAACAACTTTGCGATGATCTTGAAGTGAAATTGAATTCCATTGCGTGA 714 0.4566 MDGNVIKKSEEANEMGLRKGPWTLDEDSILINYISTHGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDALRYVWMPRLLERLHPQTGVLLSNNHNRSDSGPLLNQSKDSSSRPSSSDGEDSSEPLGQSVGNELSSFNNHLLFELGTNGGGGESLEGLWNDENMWFLQQQLCDDLEVKLNSIA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60432g00003 237 Gene3D - 64 105 - -
Stsc60432g00003 237 Gene3D - 16 60 - -
Stsc60432g00003 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Stsc60432g00003 237 SMART sant 18 56 IPR001005 -
Stsc60432g00003 237 SMART sant 59 107 IPR001005 -
Stsc60432g00003 237 MobiDBLite consensus disorder prediction 145 184 - -
Stsc60432g00003 237 CDD SANT 64 103 IPR001005 -
Stsc60432g00003 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 174 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc60432g00003 237 Pfam Myb-like DNA-binding domain 19 54 IPR001005 -
Stsc60432g00003 237 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Stsc60432g00003 237 ProSiteProfiles Myb-like domain profile. 14 105 IPR001005 -
Stsc60432g00003 237 FunFam MYB transcription factor 64 127 - -
Stsc60432g00003 237 SUPERFAMILY Homeodomain-like 16 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60432g00003 Stsc-Chr60432 16517 17889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60432g00003 17 228 MYB Transcription Factor Family AT2G47190 46.154 2.33e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60432g00003 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60432g00003 K09422 - qsa:O6P43_010892 265.003