Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60432g00002 ATGGAGATGGAGTACACAAGCAGCAGTGTTCATCACATGATGATTATGAGAAGTTTATCAGACTGTGGCTCTTCAGTAACAAATGGGAGCGAGGAAGATAATACGGAAATTAGAAAAGGTCCATGGACAGAGGAAGAGGATTCTGCTCTGCTCAACCATATCACCACCTATGGTGAAGGACACTGGAACTCTGTTGCACGCTCTGCAGGTCTAAAGAGAACAGGCAAAAGCTGCAGATTAAGATGGTTAAATTACTTGCGTCCGAATGTTAGACGAGGGAACATCACCCTGGAAGAACAGCTCTTGATTCTTGACCTCCATTCACGCTGGGGCAACAGGTGGTCAAAGATAGCAGAACAATTGCCAGGAAGAACAGACAACGAGATCAAGAACTACTGGAGAACGAGAGTGGTGAAGCAGGCGAAGCAACTGAAATGTGATGTAAACAGCAAACAGTTCAGAGACGCGTTGCGCTACGTATGGATGCCGCGCCTTGTGGAGCAGATTCAAGCCCAAGCAAAATCTTCTACGTCAATTTCAATGGCTTCATCTAAGTCTTGTTCTTCATCGTCTGGATTTGAACATGTCCAGCAGGGGTCTTCAATCTCTGATTCTTGTGTGTCTTACTATAGTTTAATGGCTACTAGCAGTGGTGGTGGTGAGAAGGGAGCCACGTCATCGTCGACAACGATGACTACGACAGTGATGAAGCAGAAAAAGGAGTGTGCGGAGATTCAGTTAGCATTTGAGGCGGATAATGGTTTCGGCGGTGCTGATTTGTGGACTGATGAAAACATTTGGTTCTTGCAGCAGCAACTTGCTGATGATGATGATCTCCTGTGA 843 0.4591 MEMEYTSSSVHHMMIMRSLSDCGSSVTNGSEEDNTEIRKGPWTEEEDSALLNHITTYGEGHWNSVARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLEEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDALRYVWMPRLVEQIQAQAKSSTSISMASSKSCSSSSGFEHVQQGSSISDSCVSYYSLMATSSGGGEKGATSSSTTMTTTVMKQKKECAEIQLAFEADNGFGGADLWTDENIWFLQQQLADDDDLL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60432g00002 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 90 IPR017930 -
Stsc60432g00002 280 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Stsc60432g00002 280 Gene3D - 39 91 - -
Stsc60432g00002 280 CDD SANT 96 135 IPR001005 -
Stsc60432g00002 280 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 34 239 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc60432g00002 280 FunFam MYB transcription factor 96 159 - -
Stsc60432g00002 280 FunFam Myb transcription factor 39 91 - -
Stsc60432g00002 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 141 IPR017930 -
Stsc60432g00002 280 Gene3D - 96 137 - -
Stsc60432g00002 280 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Stsc60432g00002 280 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Stsc60432g00002 280 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Stsc60432g00002 280 SUPERFAMILY Homeodomain-like 37 133 IPR009057 -
Stsc60432g00002 280 SMART sant 38 88 IPR001005 -
Stsc60432g00002 280 SMART sant 91 139 IPR001005 -
Stsc60432g00002 280 CDD SANT 41 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60432g00002 Stsc-Chr60432 8456 9753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60432g00002 30 276 MYB Transcription Factor Family AT2G47190 51.163 1.33e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60432g00002 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60432g00002 K09422 - gmx:778040 292.352