Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60431g00046 ATGAAACCCTCAATCGATGACGTCACCGTAAATCCCCCCGCCGCACCATCCAAGCCTGTCTTCCTTACCAAAGCCCAGCGCGAGCAATTGGCTCTCCAGCGCCGCCAGGACGAAATCGCCAACCAGAAGCGCCGCCAAGAGCAGCTCCTTTCTCGTAACCGACCTTCCTCCGATTCCGCACCCGATCCAAAACCCTCCGCTGACTCCGACCGCCGAGACCGCGACCGGGACAGGGACAGGGATAGGGATAGGGATAGGGATAGGGATAGAGACAGGGACAGGGACAGAGACCGCGAACGGGAGCGGGAACGGGAACGGGAGCGCGATAGGGCACGCGATCGGGACCGCGAGGCGGAGCGACGGAACCGGGAGAGGGAGCGCGAAGAGGAAAGTAGGGCTCGGGAGCGGGCACGGCTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAGGAGCTCGAATCCATTAAGGAGCAGTACCTTGGTTCCAAGAAGCCGAAGAAGCGTGTGATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAATACTGAAGACACATCACGCGACATGAACTCCCTCTACCAGAACCCTCACGAGGCTCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAACAGATCCGCCGCAAGGACGGCGTCGAGGAGAAGCCCGAGGAGGCCGATGCCCAGCGCCGCAAGGAGGCTGCTGCTGACCTCTACGACACCTTCGACATGAGGGTTGACCGCCATTGGAGCGAGAAGAAGCTTGAGGAAATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTACAACATTTCCTATAAGGGTTCCAAGATCCCTCGCCCTATGCGGAGCTGGGTGGAGAGCAAGCTCAGCAATGAGCTGCTGAAGGCGGTGGAGAAGGCTGGTTACAAGACCCCTTCCCCCATTCAGATGGCTGCAATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGTAAGACTGCTGCTTTTGTTCTTCCCATGTTGAGTTACATTACTAGGCTTCCCCCCATGAGTGAGGAGAATGAGGCTGAGGGTCCTTATGCTGTTGTTATGGCCCCTACTCGCGAGCTTGCCCAGCAGATTGAGGATGAGACTGTTAAGTTCGCTCAGTATTTGGGTATTAAGGTTGTTTCCATTGTTGGTGGTCAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAAGGCTGTGAGATTGTCATTGCTACTCCCGGTCGTTTGATAGATTGCTTAGAGCGGCGATATGCTGTGCTGAACCAATGCAATTATGTTGTTCTCGATGAGGCGGATCGCATGATTGATATGGGTTTCGAGCCACAGGTGATGGGTGTCTTGGATGCCATGCCTTCCAGCAACTTGAAACCTGAGAATGAAGATGAGGAGCTTGATGAGAAGAAGATTTATAGGACCACTTATATGTTCAGTGCAACCATGCCTCCGGCAGTGGAGAGGCTTGCTAGGAAGTATTTGAGGAATCCTGTTGTGGTGACCATTGGCACTGCCGGAAAGGCAACTGACTTGATCAGCCAACACGTGATCATGATGAAGGAATCTGAGAAATTCCATAAACTTCAAAGGTTGCTTGATGAACTTAATGACAAGACGGCGATTGTGTTTGTTAACACCAAGAAGAATGCGGATATGGTCGCCAAGAATTTGGACAAGGAAGGGTATCGTGTGACTACTTTGCACGGAGGGAAGTCACAGGAGCAGAGAGAGATTAGTCTGGAAGGGTTTAGGACCAAGAGATACAATGTTCTTGTTGCCACGGATGTTGCTGGACGTGGTATTGACATACCTGATGTGGCTCATGTGATAAACTATGATATGCCTGGGAACATTGAAATGTACACGCACCGTATTGGGCGTACTGGACGTGCGGGAAAGACTGGTGTGGCAACAACATTTCTCACTCTTCAGGACACTGATGTCTTTTATGACCTCAAACAGATGCTTATTCAAAGCAACAGCCCTGTTCCGCCCGAATTGGCAAGGCACGAAGCCTCCAAGTTCAAGCCAGGGTCTATTCCCGACAGACCCCCTCGAAGAAATGACACTGTGTTTGCACATTAG 2175 0.5356 MKPSIDDVTVNPPAAPSKPVFLTKAQREQLALQRRQDEIANQKRRQEQLLSRNRPSSDSAPDPKPSADSDRRDRDRDRDRDRDRDRDRDRDRDRDRDRERERERERERDRARDRDREAERRNREREREEESRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRRKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFHKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60431g00046 724 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 459 467 IPR000629 -
Stsc60431g00046 724 Coils Coil 548 568 - -
Stsc60431g00046 724 Pfam Helicase conserved C-terminal domain 554 662 IPR001650 -
Stsc60431g00046 724 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 304 332 IPR014014 GO:0003724
Stsc60431g00046 724 MobiDBLite consensus disorder prediction 1 167 - -
Stsc60431g00046 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 335 530 IPR014001 -
Stsc60431g00046 724 MobiDBLite consensus disorder prediction 64 163 - -
Stsc60431g00046 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 683 IPR027417 -
Stsc60431g00046 724 FunFam probable ATP-dependent RNA helicase DDX23 265 534 - -
Stsc60431g00046 724 Coils Coil 25 52 - -
Stsc60431g00046 724 Coils Coil 108 152 - -
Stsc60431g00046 724 Gene3D - 265 534 IPR027417 -
Stsc60431g00046 724 MobiDBLite consensus disorder prediction 699 724 - -
Stsc60431g00046 724 Coils Coil 216 242 - -
Stsc60431g00046 724 SMART ultradead3 323 545 IPR014001 -
Stsc60431g00046 724 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 240 701 - -
Stsc60431g00046 724 MobiDBLite consensus disorder prediction 30 51 - -
Stsc60431g00046 724 SMART helicmild6 581 662 IPR001650 -
Stsc60431g00046 724 Gene3D - 535 722 IPR027417 -
Stsc60431g00046 724 MobiDBLite consensus disorder prediction 692 724 - -
Stsc60431g00046 724 Pfam DEAD/DEAH box helicase 329 519 IPR011545 GO:0003676|GO:0005524
Stsc60431g00046 724 FunFam probable ATP-dependent RNA helicase DDX23 535 723 - -
Stsc60431g00046 724 CDD SF2_C_DEAD 542 671 - -
Stsc60431g00046 724 CDD DEADc_DDX23 315 531 - -
Stsc60431g00046 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 557 701 IPR001650 -
Stsc60431g00046 724 MobiDBLite consensus disorder prediction 217 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60431g00046 Stsc-Chr60431 263809 267448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60431g00046 302 684 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 1.72e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60431g00046 K12858 - gmx:100799264 1127.85