Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60431g00034 ATGTACCACCCAAACAACTCATTAGTTTGTGATCACCCCATGGATTGTGTTGCCACTGCAATGGATCCTGTTAATGGAGGTAACAGTCTAGCTTCCAAGCAGCGCTTACGCTGGACCAATGACCTCCATGAACGCTTCGTCGACGCCGTTGCTCAACTTGGTGGCCCGGATCGTGCCACACCTAAAGGTGTACTCAGAGTTATGGGTGTAAAAGGGTTAACTATATACCATGTCAAAAGTCATTTACAGAAATATCGACTAGCAAAATACCTACCTGACTCCTCATCTGATGGGAAAAACTCTGAGAAGAAAGAAACAGGGGATATACTTTCTAACCCTGATGGTTCTTCTGGGATGCAAATTACTGAAGCACTTAAGCTTCAAATGGAGGTGCAGAAGCGATTACATGAGCAATTAGAGGTGCAGAGACAATTACAATTAAGGATAGAAGCCCAGGGTAAATACTTGAAGAAGATTATTGAAGAGCAGCAGCGGCTTAGTGGTGTTCATCCAGAAGCACCTGATTCGGTGGCAGAAGCTCTGGTTCCAGGAGTTGCGCACCAAGAAGTTGATAACAAGGCCAACCTAGCAACCCCTGCCACAACCTCTGAGTGCCCCCTTCTGGAGATAGCTACAAAAGAACAAGCCCCCGCCAAGAGTCTCTCCATTGATGAATCCTTTTCATCTCAGCATGTACCGTTGACACCTGATTCTTGTTGCCATCATGTCAACCCCACCGACAGCTCTGAAGGGGAGAGATCAACAAAGAAGCAGCGGGTGAGTATAGATGGCTCACATTCTAGACCAGAAATGGTGCTTCCGCATCCGATAGTGAAGTCAAGCATCTCATCATACCAGCAACCAAATGGGTATACCTGCAAGAAGTGA 888 0.4651 MYHPNNSLVCDHPMDCVATAMDPVNGGNSLASKQRLRWTNDLHERFVDAVAQLGGPDRATPKGVLRVMGVKGLTIYHVKSHLQKYRLAKYLPDSSSDGKNSEKKETGDILSNPDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVHPEAPDSVAEALVPGVAHQEVDNKANLATPATTSECPLLEIATKEQAPAKSLSIDESFSSQHVPLTPDSCCHHVNPTDSSEGERSTKKQRVSIDGSHSRPEMVLPHPIVKSSISSYQQPNGYTCKK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60431g00034 295 Pfam MYB-CC type transfactor, LHEQLE motif 119 165 IPR025756 -
Stsc60431g00034 295 SUPERFAMILY Homeodomain-like 32 87 IPR009057 -
Stsc60431g00034 295 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
Stsc60431g00034 295 MobiDBLite consensus disorder prediction 234 295 - -
Stsc60431g00034 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Stsc60431g00034 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 22 273 IPR044848 GO:0003700
Stsc60431g00034 295 MobiDBLite consensus disorder prediction 91 117 - -
Stsc60431g00034 295 FunFam Myb family transcription factor 32 90 - -
Stsc60431g00034 295 Gene3D - 32 91 - -
Stsc60431g00034 295 MobiDBLite consensus disorder prediction 279 295 - -
Stsc60431g00034 295 MobiDBLite consensus disorder prediction 246 264 - -
Stsc60431g00034 295 Coils Coil 122 142 - -
Stsc60431g00034 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60431g00034 Stsc-Chr60431 213058 215788 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60431g00034 68 289 G2-like Transcription Factor Family AT2G01060 62.222 6.68e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60431g00034 Myb_DNA-binding 6.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60431g00034 - - aip:107637104 437.187