Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60431g00023 ATGGATACCTTGAAGAAAACTCCTCCTAATTGGGACGGTTCGGATCCTTGTGATTGTTGGGACGGAATTAAGTGTGAGAATTCACGTGTTACAGCCATAACATTGCCAAGCATGGGTTTGGAAGGTGAGCTTTCTGGAGATATTGGATCACTATCAGAATTGCAGATTCTGGATCTTTCTTACAACAAGGACTTGACAGGACCACTTCCACAAGCCATTGGAGAGTTGACGAAACTGTCAACCTTAATTCTTGTTGGCTGTAGCTTCAATGGTCCTATTCCTGATGAAATTGGATTTCTGCAGGAGCTTCGCTATATATCATTAAATTCCAATAGCTTCACTGGGGAGATTCCACATTCGATTGGTAATCTGTCGAAGCTCTATTGGTTAGATTTAGCTGACAATGAGCTTCAAGGACCTATCCCAGTATCAAGTGGCAGTGTACCTGGTCTTGATAATTTACACCATGCTAAACATTTTCATCTTGGGAAGAATAATCTCTCTGGCAATATTCCTCCTCAACTTTTTAGCTCAGAAATGGTTCTGATCCATTTGCTTTTGGAAAGCAATAATCTCACAGGCAAGATTCCATCTACACTTGGATTGGCTAAGACTCTGGAGGTCTTGCGTTTGGATAGTAATTTCTTAAGTGGACATGTGCCTCCAAACATCAACAATCTTACCAATGTTCAAGAGCTGTACTTGTCGAACAATAAACTTTCCGGCACCCTGCCCAACCTTGGTGAAATGAGTGCCCTCAACTACCTGGATGTGAGCAACAATACTTTTGAGCCAATGGATTTCCCATCATGGATTTTGACTCTTACTTCCTTAACAACATTAATTATGGAGAACACACAACTTCAAGGAGAGGTTCCTGCTTCTTTGTTTAGTTTTGTCAATTTGCAGACTGTGGTGTTAAAAGGCAACAAAATAAATGGAACCTTGAATCTCAGCTCCACCTACAGCAAGCATCTGCGACTTATTGATCTCGAAAATAATGTAATTGACAATTTTGAGCAAAAATATGACCCTTTAAATGTCACGATAATGCTTAAGGGTAACCCAGTTTGCTATGAAACTATAGGGGAGGCAAATCCTCCCTACTGCTCAAATATTCAAGCTGATCAACTGTCATATATAACTCCAACGAATAACTGCCAGCCTAGCAGTTCTTGCAGTTTAGGACAGCTTCCTAGCCCCAACTGTGCATGTGCATATCCATATACAGGAACTTTAACTTTCAGAGCTCCTTCCTTTTCAGACCTAGGAAACAAGTCTTACTTCCAACAGCTTGAGAAGGGTCTAATGCAATCTTTTGACTCTCATCGTCTACCCGTTGATTCTGTTTTGTTGAGTCATCCAACTGAGGATCCAAATCACTATCTTGAACTGAGTTTACAAGTCTTCCCATCAGGGCTGGATCGTTTCAATCGAACGGGGATTTATACCATTGGTTTTCTGCTAAGCAACCAGACTTTTAAGCCTCCTAAAGTTTTTGGACCGTTTTACTTTGTTGCAGATAAATATATAAACTTTGGAGACTATGGTCCTATGGAGTCGAGCAAATCAGTTAACATTGGAATCATAGCTGCAGCAGTGGTTGGTGGTTTTGTGCTGGTAGTGTTATTAGTGGTAGCAGCCGTTTACGCTTTCTGCCAAAAGAAAAGAGCTGAAAGAGCAATTGGACAAAGCAATCCCTTTAGAAGCTGGGATATAGCTGAGAGTAAGGGTGACATGCCTCAGTTGAACGAAGCACGCCGGTTTTCTTTTGAAGAGCTTAAAAGATACACCAGAAATTTTTCTCAAGCCAATGATATTGGATCTGGGGGTTATGGGAAGGTTTACAAGGGAACCCTCCCCAATGGACAACTGGTAGCAATAAAAAGAGCTCAAAGAGAATCTAAGCAGGGAAGGCTTGAGTTCAAAGCTGAGATTGAGCTGCTATCAAGGGTCCACCACAAGAATCTTGTTACCCTTGTAGGATTCTGCTTTGAGCATGAAGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGAACATTAAAGGACACTCTCACAGGGAAATCAGGAATTAGATTGGATTGGATCAAAAGGCTAAAAGTTGCACTTGGTGCTGCTCAGGGTTTGACTTATCTTCATGAACTTGCTGATCCTCCCATCATACACAGAGACATCAAATCAAACAATGTTTTGCTGGATGAGTACCTAAACGCCAAAGTTGGTGATTTCGGTCTCTCCAAGTCTATTGTTGATCCCGAAAAGGATCACGTTACCACTCAAGTTAAAGGAACAATGGGTTACTTGGATCCAGAGTATTATACGAGTCAACAAGTGACAGAGAAGAGTGATGTGTATAGCTTTGGAGTGCTGATGTTGGAGCTGATATCTGCAAGAAGGCCAATAGAAAGAGGGAAGTACATTGTGAAAGAGGTTAGGAATGCAATGGACAAGACAAAAGTGCTGTGTGGTCTGCATGAAATCATTGACCCAAGCATTGGTGTAGGGTCCTCCAGCAGCAGCATTGGGGTTGTTGGTCTGGACAAGTTTGTTGATTTGGCTATGAAATGCGTTTCAGATTCAGGTGTTGAGAGACCAAAGATGAGTGAGGTTGTTAGAGAATTAGAGAACATATTGCATTATTCATCAGCTGCTGCTGCTGCTGGTTCAAATGATGAATCATCGCCAGCTTCCATGATTTCTTCCAGTTATGAGGAGGTTAGCAGAGGCAGTTCCAGTTTCCATCCTTACAGCAGTGAATCCTTTGATTTCAAAGCCCCTCTTGCCACTTCCATATCCAAAACTGCACCCTAA 2814 0.4172 MDTLKKTPPNWDGSDPCDCWDGIKCENSRVTAITLPSMGLEGELSGDIGSLSELQILDLSYNKDLTGPLPQAIGELTKLSTLILVGCSFNGPIPDEIGFLQELRYISLNSNSFTGEIPHSIGNLSKLYWLDLADNELQGPIPVSSGSVPGLDNLHHAKHFHLGKNNLSGNIPPQLFSSEMVLIHLLLESNNLTGKIPSTLGLAKTLEVLRLDSNFLSGHVPPNINNLTNVQELYLSNNKLSGTLPNLGEMSALNYLDVSNNTFEPMDFPSWILTLTSLTTLIMENTQLQGEVPASLFSFVNLQTVVLKGNKINGTLNLSSTYSKHLRLIDLENNVIDNFEQKYDPLNVTIMLKGNPVCYETIGEANPPYCSNIQADQLSYITPTNNCQPSSSCSLGQLPSPNCACAYPYTGTLTFRAPSFSDLGNKSYFQQLEKGLMQSFDSHRLPVDSVLLSHPTEDPNHYLELSLQVFPSGLDRFNRTGIYTIGFLLSNQTFKPPKVFGPFYFVADKYINFGDYGPMESSKSVNIGIIAAAVVGGFVLVVLLVVAAVYAFCQKKRAERAIGQSNPFRSWDIAESKGDMPQLNEARRFSFEELKRYTRNFSQANDIGSGGYGKVYKGTLPNGQLVAIKRAQRESKQGRLEFKAEIELLSRVHHKNLVTLVGFCFEHEEQMLVYEYVPNGTLKDTLTGKSGIRLDWIKRLKVALGAAQGLTYLHELADPPIIHRDIKSNNVLLDEYLNAKVGDFGLSKSIVDPEKDHVTTQVKGTMGYLDPEYYTSQQVTEKSDVYSFGVLMLELISARRPIERGKYIVKEVRNAMDKTKVLCGLHEIIDPSIGVGSSSSSIGVVGLDKFVDLAMKCVSDSGVERPKMSEVVRELENILHYSSAAAAAGSNDESSPASMISSSYEEVSRGSSSFHPYSSESFDFKAPLATSISKTAP 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60431g00023 937 CDD STKc_IRAK 607 878 - -
Stsc60431g00023 937 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 677 892 - -
Stsc60431g00023 937 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Stsc60431g00023 937 SUPERFAMILY Protein kinase-like (PK-like) 587 905 IPR011009 -
Stsc60431g00023 937 Gene3D Transferase(Phosphotransferase) domain 1 677 899 - -
Stsc60431g00023 937 PANTHER RECEPTOR-LIKE PROTEIN 55 4 878 - -
Stsc60431g00023 937 SMART serkin_6 601 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60431g00023 937 Gene3D Ribonuclease Inhibitor 2 146 IPR032675 -
Stsc60431g00023 937 Pfam Protein tyrosine and serine/threonine kinase 604 803 IPR001245 GO:0004672|GO:0006468
Stsc60431g00023 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Stsc60431g00023 937 FunFam Leucine-rich repeat protein kinase family protein 568 676 - -
Stsc60431g00023 937 FunFam Leucine-rich repeat family protein 1 146 - -
Stsc60431g00023 937 FunFam Leucine-rich repeat protein kinase family protein 147 246 - -
Stsc60431g00023 937 Gene3D Ribonuclease Inhibitor 147 355 IPR032675 -
Stsc60431g00023 937 ProSiteProfiles Protein kinase domain profile. 601 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60431g00023 937 SUPERFAMILY L domain-like 24 373 - -
Stsc60431g00023 937 Gene3D Phosphorylase Kinase; domain 1 571 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60431g00023 Stsc-Chr60431 118276 122884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60431g00023 7 931 Receptor kinase-like Gene Family AT5G49760 56.512 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc60431g00023 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60431g00023 - - gmx:100811702 1271.91