Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60431g00018 ATGGCAATTGCAGCGGCGAATTCATCTCCCACGATGAGCCTGAGTCACAGCCACAGCCACGAGGACGGCACCACGACGGCGGCGTCCACGACCAACGAGAATCTGAACGGGAACGGGAATAATAAGCAAGAGGATGACGATCACGAGCAGGACATGGTGATGCCGGGGTTTCGTTTCCACCCGACGGAAGAAGAGCTTGTGGAGTTCTACCTTCGGCGTAAGGTGGAGGGGAAACGTTTCAACGTTGAGCTCATTACTTTCCTTGATCTTTATCGCTACGACCCTTGGGAGCTTCCTGCGTTGGCAGCGATAGGGGAGAAGGAGTGGTACTTCTATGTGCCTCGAGACAGAAAGTACAGGAACGGAGATCGTCCGAATCGGGTGACGACGTCGGGTTACTGGAAGGCAACGGGAGCGGATAGGATGATCCGGACGGAGAATTTCAGGTCGATCGGGTTGAAGAAAACCCTAGTTTTCTACTCAGGGAAAGCTCCAAAAGGAATCCGTACAAGTTGGATTATGAACGAGTACCGTTTGCCCCAACACGAAACTGAACGATACCAAAAGGCGGAGATATCGCTGTGCCGGGTATACAAGAGGGCTGGAGTGGAAGACCATCCGTCCTTGCCACGCTGTCTACCAACAAGGGCTCCATCTTCAAGACCACAACTTTCTGATCATCAAAATCAGAATCAGAATCACAAGAACAAGCAGCAGCATCACAATGAATTGCTTCATCATCAACTCAACATAGGATTTGGGGGTCAAGGTCAAGGTCAAGGTCAAATCCAACAACAACCGAAGGCAATCATCCATCATCAATTAGGGGACACCGCCGACGGAACTAGTTCTGATCATGATCATGATCATGTCACCACCGCTCTCGCCCTCTCCAAACACAACAATAGTAATAATAATAATAATAATAATAATGGTAGTTATCGTGCTCCTCCCATGGGAATCCCACCGGTGCTTCTTCCCATGGACGACGAAGCCTTCATCCTCATGCAGCAGCAGCAGCAATCCAAGCAACAAGTAGCACATTCATCTAGTTTGATCCCCACATTCTTCCCCGGCGGGCCTTCTTCCGGCAACAACAACCCCAGCATGATGGATGATCTGAACAGACTTGTCAGTTATCAACAGCACTTCTACAATAATAATCCGAATCATCATCATCAGCAGTTGTCGAGTTTGTTGATGCATCATCATCATCAACAACAACAACAACAACAACAAGGTCCTTCTTCTCCATCTCCAATAATGTCTCTGAATAACACTACTCCTACTCCTACTCCTACTACTCCTATTCCGCTTCCAACAACCACCTTCTCTGACCGCCTCTGGGAGTGGAATCCACTCCCTGAGGCTAACCAGCGCGAGTACAGCAACATGTCCTTCAAGTAA 1407 0.4897 MAIAAANSSPTMSLSHSHSHEDGTTTAASTTNENLNGNGNNKQEDDDHEQDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRAPSSRPQLSDHQNQNQNHKNKQQHHNELLHHQLNIGFGGQGQGQGQIQQQPKAIIHHQLGDTADGTSSDHDHDHVTTALALSKHNNSNNNNNNNNGSYRAPPMGIPPVLLPMDDEAFILMQQQQQSKQQVAHSSSLIPTFFPGGPSSGNNNPSMMDDLNRLVSYQQHFYNNNPNHHHQQLSSLLMHHHHQQQQQQQQGPSSPSPIMSLNNTTPTPTPTTPIPLPTTTFSDRLWEWNPLPEANQREYSNMSFK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60431g00018 468 ProSiteProfiles NAC domain profile. 53 200 IPR003441 GO:0003677|GO:0006355
Stsc60431g00018 468 FunFam NAC domain-containing protein 35 62 203 - -
Stsc60431g00018 468 MobiDBLite consensus disorder prediction 218 232 - -
Stsc60431g00018 468 Pfam No apical meristem (NAM) protein 55 179 IPR003441 GO:0003677|GO:0006355
Stsc60431g00018 468 MobiDBLite consensus disorder prediction 1 39 - -
Stsc60431g00018 468 MobiDBLite consensus disorder prediction 339 372 - -
Stsc60431g00018 468 Gene3D NAC domain 62 203 IPR036093 GO:0003677|GO:0006355
Stsc60431g00018 468 SUPERFAMILY NAC domain 53 199 IPR036093 GO:0003677|GO:0006355
Stsc60431g00018 468 MobiDBLite consensus disorder prediction 206 241 - -
Stsc60431g00018 468 MobiDBLite consensus disorder prediction 400 443 - -
Stsc60431g00018 468 MobiDBLite consensus disorder prediction 1 48 - -
Stsc60431g00018 468 MobiDBLite consensus disorder prediction 400 430 - -
Stsc60431g00018 468 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 50 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60431g00018 Stsc-Chr60431 93732 95570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60431g00018 52 216 NAC Transcription Factor Family AT2G02450 92.121 7.01e-113 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60431g00018 NAM 5.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60431g00018 - - gmx:100812779 495.738