Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60431g00016 ATGGAAGCGATACCGCACCCACTACCCAGAACTGTTGAGGAGGTTTTCAGCGACTTTAAGGGCAGGCGAGCTGGATTGATCAAAGCCCTAACCGCCGATGTTGATAAGTTTTACCAGCAGTGCGATCCTGACAAGGAGAATTTGTGTTTATATGGATTTCCAAATGAATCGTGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAGCTTCCTGAACCAGCATTAGGTATCAACTTTGCCAGAGATGGCATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCTCGCTTTGGATTTGGCAAGAATGAAAGGAAAAGGCTTTTCCAGATGATCAATGATCTGCCGACTATCTTTGAAATTGTTACAGGAAGTGCCAAGCAATCAAAGGACCAACCAGCTGCTCACAACAATGGTAACAAAAGCAAATCAAGTGGAAAGATGCAGTCCCGTCAATCTGATAATCAGGCCAAGGGAGTGAAGATGTCTGCACCACAAAAAGAAGAGGATGATAGTGGAGAAGAGGAAGAAGATGATGATGAACAAGGTGCAACATGTGGTGCCTGTGGTGACAATTATGGAAACGATGAATTCTGGATTTGTTGTGATATGTGTGAGAGATGGTTCCATGGCAAATGTGTTAAAATTACTCCCGCCAAGGCTGAGCACATCAAGCAATACAAGTGCCCTAGTTGCAGTAACAAGAGGGCTAGAGTTTGA 765 0.4484 MEAIPHPLPRTVEEVFSDFKGRRAGLIKALTADVDKFYQQCDPDKENLCLYGFPNESWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEIVTGSAKQSKDQPAAHNNGNKSKSSGKMQSRQSDNQAKGVKMSAPQKEEDDSGEEEEDDDEQGATCGACGDNYGNDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60431g00016 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Stsc60431g00016 254 PANTHER CPG BINDING PROTEIN 9 253 IPR045104 GO:0006355|GO:0042393
Stsc60431g00016 254 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Stsc60431g00016 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Stsc60431g00016 254 MobiDBLite consensus disorder prediction 184 199 - -
Stsc60431g00016 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Stsc60431g00016 254 SUPERFAMILY FYVE/PHD zinc finger 189 251 IPR011011 -
Stsc60431g00016 254 MobiDBLite consensus disorder prediction 141 199 - -
Stsc60431g00016 254 Pfam PHD-finger 201 250 IPR019787 -
Stsc60431g00016 254 CDD PHD_AL_plant 201 250 IPR044104 -
Stsc60431g00016 254 MobiDBLite consensus disorder prediction 141 175 - -
Stsc60431g00016 254 SMART PHD_3 200 248 IPR001965 -
Stsc60431g00016 254 FunFam PHD finger alfin-like protein 193 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60431g00016 Stsc-Chr60431 77770 82270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60431g00016 1 251 Alfin-like Transcription Factor Family AT1G14510 77.689 1.22e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Stsc60431g00016 Alfin 4.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60431g00016 K26274 - gmx:100807826 466.463