Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60431g00010 ATGGAACTATCGAGTCAAGAAGGAGAAATAGCAATCCCAATAAACAGCAGCGCTGCCGCCAATTATGGCGGCAATGGCCATGGACCCCACATCAACATTCACCAAAACCCTTCCAATGGCTCCTCTATGCACCCTCCCCACGATATTCACGCTCACAACACTAACAATAATAATAATCTCAAGCAAGACGAAGAGGAAGACGACGACGTCGTGGTTCCCCTCGTCAGGTACAGAGAGTGCCTCAAGAACCATGCCGCCGCCATGGGAGGAAACGCCACCGACGGATGCGGCGAGTTCATGCCAAGCGGTGACCACGGCACCATGGAAGCCCTCACCTGCTCCGCCTGCCACTGCCACAGAAACTTCCACAGAAAGGAAATCCAAGGAGATCCAGCCTCCTCAGCTCCACCACCGCCCTTGCTCGAGTACCACCACCACCACTTCAACACCGCCACAAGGCACCTCAGCGCTTCTAGAAAGTTCCTTCTCGCTGGAAACAACAAGAACAACATGCATCATCATCTAGGGTACGCTAGCAGTGGCGGCGGTAACATCCTTCCGTCTCGAACGGTGGCGCCGGCGCAGATGATAATGCCGTACAACATAGGTCCGATGCCGTCGTCGGAGCAGTCGGACGAGCAGGACGAGAGGGTGAAGAAGAAGAGGTTCAGGACGAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCTGGCGTTTGCGGAGAAAGTTGGTTGGAAGATTCAAAAGCAAGAAGATTCAGTTGTTCAGCATTTCTGCAACGAGATTGGCGTGAAACGCAGAGTCCTCAAGGTTTGGATGCATAACAATAAACACAACCTCGCCAAGAAAAACCTTCTCATCATTCCCCCAACCTCTTCTACTTAA 882 0.5261 MELSSQEGEIAIPINSSAAANYGGNGHGPHINIHQNPSNGSSMHPPHDIHAHNTNNNNNLKQDEEEDDDVVVPLVRYRECLKNHAAAMGGNATDGCGEFMPSGDHGTMEALTCSACHCHRNFHRKEIQGDPASSAPPPPLLEYHHHHFNTATRHLSASRKFLLAGNNKNNMHHHLGYASSGGGNILPSRTVAPAQMIMPYNIGPMPSSEQSDEQDERVKKKRFRTKFSQEQKEKMLAFAEKVGWKIQKQEDSVVQHFCNEIGVKRRVLKVWMHNNKHNLAKKNLLIIPPTSST 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60431g00010 293 SUPERFAMILY Homeodomain-like 208 281 IPR009057 -
Stsc60431g00010 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 279 - -
Stsc60431g00010 293 MobiDBLite consensus disorder prediction 21 67 - -
Stsc60431g00010 293 FunFam Zinc-finger homeodomain protein 2 207 281 - -
Stsc60431g00010 293 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 76 127 IPR006456 -
Stsc60431g00010 293 NCBIfam homeobox domain, ZF-HD class 220 276 IPR006455 -
Stsc60431g00010 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 77 126 IPR006456 -
Stsc60431g00010 293 Gene3D - 206 282 - -
Stsc60431g00010 293 MobiDBLite consensus disorder prediction 31 58 - -
Stsc60431g00010 293 Pfam ZF-HD protein dimerisation region 75 127 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60431g00010 Stsc-Chr60431 47074 47955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60431g00010 1 283 ZF-HD Transcription Factor Family AT1G14440 43.750 3.84e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc60431g00010 ZF-HD_dimer 8.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60431g00010 - - aip:107619596 356.681