Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00043 ATGTTGAAGCTGTCTCGCCTTGTGCCATCCGTATCCACTTCCAGGGACTCTCTTCTTCGCCATTCACCTGCCTTTTCTACATCTACCAATAAATATGCTGCTAAAGGATATAGCTCTAATCGCATATTTGCTCCTTATTCCGTTTACAAGGGCAAAGCTGCTTTCTCTTTGAGTCCTATCCTTCCTACTTTCACTAAGTTGGATAGTGGGGCCGTTGTAGTTGATCGTCGTGGTTCAATGATGATGGTTTTCATGCACGCCATTGGGGAGCGCAAATATGACTGGGAGAACAAACAGAGATTCGCTCTCTCGGCAACTGAAATTGGCTCTTTGATAAGCATGGGCCCTCAGGATTCTTGTGAATTCTTCCATGACCCCTCAATGCTATCAAGTAATGCCGGTCAAGTGAGAAAAAGCTTATCAATTAAGCCTCATGCAAACAGCAATGGCTACTTCATATCTCTGAATGTTGTCAACAATCTGTTAAATACCAAGGATTTCTTGAGTGTCCCTGTCACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATCATGGGTTGGGACCACATGACTCATCAGTCAGGCGGCACAGTTGGTCTTAAATCAAAAGTGGAACAACCTGCTTTAGACTTGGAATGGGATAAGTGA 669 0.4425 MLKLSRLVPSVSTSRDSLLRHSPAFSTSTNKYAAKGYSSNRIFAPYSVYKGKAAFSLSPILPTFTKLDSGAVVVDRRGSMMMVFMHAIGERKYDWENKQRFALSATEIGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHANSNGYFISLNVVNNLLNTKDFLSVPVTTAEFAVMKTACSFALPHIMGWDHMTHQSGGTVGLKSKVEQPALDLEWDK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00043 222 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 22 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Stsc60430g00043 222 Pfam Whirly transcription factor 48 182 IPR013742 GO:0003697|GO:0006355|GO:0006952
Stsc60430g00043 222 SUPERFAMILY ssDNA-binding transcriptional regulator domain 39 203 IPR009044 GO:0003677|GO:0006355
Stsc60430g00043 222 Gene3D Transcriptional Coactivator Pc4; Chain A 32 202 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00043 Stsc-Chr60430 223137 225787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00043 31 222 Whirly Transcription Factor Family AT1G71260 65.990 1.73e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Stsc60430g00043 Whirly 2.5e-55 CL0609