Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00041 ATGGCTGCTGCACCAGCAATAATACCAAGTCACATGAAAGCTTGGGCCTATTCTGAGCATGGGAAATCAAACGTTGCTCTCAAATTCCATCCTAATTTTCCGATTCCTCAACTGAATGAAGATCAGGTACTAATCAAGGTTGTTGCCGCAGCCATAAATCCCATAGATTATCACAAGATTCTTGGAAATTACAACGATTCGGACGCCCCTTTTCCGATTGTTCCTGGCTATGATGTTGCGGGCGTGGTGATCAAAGTAGGAAGTGCAGCAAAGAAGTTTAAAGAAGGAGATGAAGTGTATGGCATGGTTGAGGCTAAAGATGTTGGCTCTTTGGCTGAATATACAACAGCACAAGAGAATGGTTTGGATCACAAGCCTCCTAATTTGAGCTTTGCTGAAGCTGCTAGCCTTCCTCTGGCAATTGAAACTGCTTATGGTGCCCTTCACAAAGTTGGACTTTCTGCTGGTCAATCTATCCTTGTTCTCGGAGGCGCCGGCGGCGTCGGAACCCTTGCTGTTCAGATTGCCAAACATGTTTTTGGTGCTTCAAAGGTAGCAGCTACAGTCAGTACTGGAAAACTGGAATTGATGAGGAGGCTGGGGGTTGATTTGCCAATTGATTATAAAAAGGAAAACTTTGAAGACCTGCCTGACAAATTTGATGTTGTGTTTGATGCAATAGGGCAGACTAACCAGGCATTTAAGGCTCTCAAAGAAGGTGGCAAAGTGGTGACATTAATGCCTCCTGGAGTTTCACCAGCTATCCTGTTCATAACCACCCCTGATGTGTCTATGTTGCAGAAATTAAGGCCATACTTGAAGAGTGGCAAGGTGGTACCAGTACTCGACCCCAGAGGCCCATTTCCATTTTCACAGACTATTGAAGCATTATCCTACCTGGAAACACGTAGAGCAGCTGGAAAGCTAGTCATCTATCCCATATCCTGA 948 0.4494 MAAAPAIIPSHMKAWAYSEHGKSNVALKFHPNFPIPQLNEDQVLIKVVAAAINPIDYHKILGNYNDSDAPFPIVPGYDVAGVVIKVGSAAKKFKEGDEVYGMVEAKDVGSLAEYTTAQENGLDHKPPNLSFAEAASLPLAIETAYGALHKVGLSAGQSILVLGGAGGVGTLAVQIAKHVFGASKVAATVSTGKLELMRRLGVDLPIDYKKENFEDLPDKFDVVFDAIGQTNQAFKALKEGGKVVTLMPPGVSPAILFITTPDVSMLQKLRPYLKSGKVVPVLDPRGPFPFSQTIEALSYLETRRAAGKLVIYPIS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00041 315 Gene3D - 20 311 - -
Stsc60430g00041 315 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 6 314 IPR044626 GO:0016628
Stsc60430g00041 315 SMART PKS_ER_names_mod 22 311 IPR020843 GO:0016491
Stsc60430g00041 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 129 254 IPR036291 -
Stsc60430g00041 315 Gene3D - 148 262 - -
Stsc60430g00041 315 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 156 177 IPR002364 GO:0008270|GO:0016491
Stsc60430g00041 315 SUPERFAMILY GroES-like 9 161 IPR011032 -
Stsc60430g00041 315 Pfam Zinc-binding dehydrogenase 200 311 - -
Stsc60430g00041 315 CDD MDR_like_2 12 311 - -
Stsc60430g00041 315 Pfam Alcohol dehydrogenase GroES-like domain 41 102 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00041 Stsc-Chr60430 219316 221205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00041 13 135 Monolignol Biosynthesis Gene Families AT4G39330 29.839 1.93e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00041 K18980 - gmx:100817947 410.994