Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00040 ATGGAACCTAATGACAACCAACTCAGCTCCTACTTTCACCAACAACAACAACAGCACCACCATCAGCAACAGCATCACCACCACCAGAGCGCCGCCGCCCCCTCCGCCGTCGGAGCCACCACGGCTGTCTCGCCCACCAACGGCCTTTTGGGGAACACCGATGGGACCCACTCGCACATGCTGTACCCTCACACGGTACCCTCGGCGGTGTCGTCGCAGCTGGTGGAGCCGCCGGCGAAGAGGAAGAGAGGTCGGCCTCGCAAGTACGGTACTCCCGAGCAAGCCCTCGCTGCGAAGAAAGCCTCTACGACGTCATCTTCCGCCGCTCACTCCTTCTCCCCAACCTCCTCCTCCTCCGCCGCAAAGAAATCCCTTCATCACCAGCCTCGTGCCTTGGGTGGTTCCTCCTCTCCTTCCTCCTCTTCCAAGAAATCGCACTCAATTGGTTTAGGACAAGGCTTCACTCCTCATGTCATTGCCGTACCTGCTGGTGAGGATGTTGGCCAAAAGATTATGTTATTTATGCAACAAAGTAAGCGTGAGATGTGCATTTTGTCTGCATCTGGTTCCGTATGCAATGCCTCTCTTCGTCAGCCAGCGACCTCAGGAGGCAATGTTACGTATGAGGGTCGGTTTGATATTATTTCTCTTACTGGTTCCTATGTTCGTAATGAAGTCGGTAGTCGATCTGGTGGTCTGAGTGTATGCTTATCTAATACTGATGGACAAATAATTGGTGGTGGAGTTGGTGGGCCCCTTAAAGCAGCTGGTCCAGTTCAGGTTATTGTTGGTACATTTTTTGTTGACTCCAAGAAGGATAGCGGTGCTGGTGCAAAAGGTGATGCCTCAGCCAGTAAGTTGCCGTCACCAACTGGTGACTCGGTATCAAGTTTAGGTTACCGCCCAGTTGACTCTGCTGGTGGAAATCCAATCCAGGGAAATGAAGAGCATCAAGCTATGGGGGGAAGTCATTACATGATTCAACAGCTTGGTTTGCACATGACGCCTCCCAGGTCAACAGACTGGGGAGGCCATCCGGAGTCAAGAAATTCCGGCTATGATCTGACAGGAAGAACAGCTCACGGGGTGCACCAATCTCCGGAGAACGGGGGCTATGACCAGATCAATGATTGA 1134 0.5282 MEPNDNQLSSYFHQQQQQHHHQQQHHHHQSAAAPSAVGATTAVSPTNGLLGNTDGTHSHMLYPHTVPSAVSSQLVEPPAKRKRGRPRKYGTPEQALAAKKASTTSSSAAHSFSPTSSSSAAKKSLHHQPRALGGSSSPSSSSKKSHSIGLGQGFTPHVIAVPAGEDVGQKIMLFMQQSKREMCILSASGSVCNASLRQPATSGGNVTYEGRFDIISLTGSYVRNEVGSRSGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFVDSKKDSGAGAKGDASASKLPSPTGDSVSSLGYRPVDSAGGNPIQGNEEHQAMGGSHYMIQQLGLHMTPPRSTDWGGHPESRNSGYDLTGRTAHGVHQSPENGGYDQIND 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00040 377 MobiDBLite consensus disorder prediction 1 149 - -
Stsc60430g00040 377 Gene3D - 156 279 - -
Stsc60430g00040 377 MobiDBLite consensus disorder prediction 334 377 - -
Stsc60430g00040 377 MobiDBLite consensus disorder prediction 97 149 - -
Stsc60430g00040 377 ProSiteProfiles PPC domain profile profile. 151 291 IPR005175 -
Stsc60430g00040 377 MobiDBLite consensus disorder prediction 1 18 - -
Stsc60430g00040 377 MobiDBLite consensus disorder prediction 28 54 - -
Stsc60430g00040 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 17 304 IPR039605 GO:0003680
Stsc60430g00040 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 267 - -
Stsc60430g00040 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 266 IPR005175 -
Stsc60430g00040 377 CDD DUF296 155 266 IPR005175 -
Stsc60430g00040 377 MobiDBLite consensus disorder prediction 274 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00040 Stsc-Chr60430 212951 217457 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00040 54 374 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 48.547 1.25e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00040 - - adu:107491998 572.007