Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00039 ATGGAAAGAGGACTGTGTCCTCTCCTGTTGTTGCTTCTGGTTTTTTTTTCTCTTGTGCTCTCTGTCTATGCTATTGATCAGTTTGGACACTGTGAACCTTGTGATGATGAGGAAGGGATTTGGAGCATCCAGAGCATCCTGGTTTGCCAAAAAGTCAGTGACTTCTTCATTGCTATTGCCTATTTTTCCATACCCCTTGAGCTCCTTTACTTCATTAGCTATTCCAATGTCCCATTCAAATTGGTCTTCCTTCAGTTCATTGCCTTCATTGTCCTCTGTGGCTTGACACATTTGCTCAATGCCTACACCTATTATGGCTCTCCCTCTTTCCAGCTCTTGATCTCTCTCACTGTTGCGAAATTCCTTACTGCTCTTGTCTCCTGTGCTACTGCAATCACCTTTCCTACTCTCATTCCCCTTCTTCTCAAGATCAAAGTGAGGGAGCTTTTCTTGAGGCAGAATGTGATGGAATTGGGCCAAGAGGTTGGGATGATGAAGAAACAAAAGGAAGCGAGCTGGCATGTTCGTATGCTGACTCGTGAAATTAGGAAGTCTCTGGATAAGCACACCATCTTGTATTCCACCCTTGTTGAGCTTTCCAAGGCCTTGGATCTGCATAATTGTGCTGTGTGGATGCCAGACAATGACAGGCGAGAGATGCATTTGACCCATGAATTGAAACCAAGCTCGCCAAATAAATTAGAAGTTCCTATTCCTATAAGTGATCCAGATGTGTTGGAGATAAGAAAGAGTAAGGGTGTGCTGATTTTGAGGCCTGATTCTGCATTGGGAGCTGCCAGCGGTGGTCAATCTGGGGAGTCGGGTTCTGTAGCAGCTATCCGCATGCCAATGCTTCATGTTTCCAATTTCAAAGGAGGGACACCGGAAATGGTTGAGACATCTTATGCTATACTCGTTTTGGTTCTCCCAAATTTAAACTCCAGGTCTTGGAACTCCCATGAGATGGAGATTGTCGAAGTAGTTGCTGATCAAGTTGCTGTAGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTGATGAGGCAGAAACTTGCAGAGCAAAACCGAGCACTGCAACTTNNNNNNNNNNAGAGTGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTCAGAAAGTCATGAGTAATGGAATGCGAAGGCCTATGCATTCAATCCTTGGCTTGCTTTCAATATTTCAGGAGGACAACCTAAGACCTGAACAGAAGATTATTATTGACACAATGTTGAGAGTTAGCAATGCACTCTCCAGTTTGATTAATGATGTCATGGAGATTTCATCAAATGACAAAGGAAGCTTTCGATTAGAGATGAAACCTTTCCATCTGCATTCCATGATGAGGGAAGCTTCTTGCATTGCCAAGTGTTTGTGTGTACATAAAGGCTTTGGTCTTGAAATTGATGTCCACAAGGCTTTACCAGGATTGGTTATAGGTGACGAGGCAAGGTCTTTTCAAGTAATTTTGCACTTGATAGGTTATCTGTTGAACATGTATGACAAAGGGACTCTCATTTTTCGAGCACTTCTTGAAAGCGATAGTGGAGATAAGGATGATAAAGGTTTTGGGATATGGAGATCAAGTGTGCAAAATGACTATGTATATGTAAAATTTACTTTTCAGGTAACGGGTATTACTTCCGAATCAGATGTATTAAATTCAGCAAGACATTATTCTGGTAGAAGGCAATACAACAATGAACCTAATGAGGGCCTGAGCTTCAGCATGTGCAAGACACTGGTGCAGATGATGCAAGGTAATATCTGGATGTCACCAAACTCGTCGGGTTTGGCGCAAGGCATGACACTTCTTCTCAAGTTTCAGCTTGGAAGATCCACTTTTGTACTAAAAGATGCTCCAATCCCACAGTTCAGAGGCCTTAAGGTTCTGTTGGCGGATGACGATGATGTAAACAGGACTGTGACAAAGAAGCTGCTTGAGAAGCTGGGTTGTCAAGTAAACGCTGTTTCATCAGGTTTCCAGTGCCTCAGTGCTATAACTGCCTCTGGCAACACGATCAAAATTATCCTCTTAGATCTTCACATGCCTGAAATGGATGGCTTCGAAGTGGCTAGAAGGATCCGCAAGTTCCACAGCCGAAATTGGCCCTTGATCATAGCTCTCACGGCGAGCGCGGAAGATGATGTGAGGGAGAAATGCATACAAGTGGGAATGCATGGATTGATTCGCAAACCGATCCTTCTTCAAGATATAGCTGATGAACTCAGGACAGTGTTGCTACGTGCAGGTGAAAAATTGTGA 2280 0.4355 MERGLCPLLLLLLVFFSLVLSVYAIDQFGHCEPCDDEEGIWSIQSILVCQKVSDFFIAIAYFSIPLELLYFISYSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGSPSFQLLISLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRQNVMELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHTILYSTLVELSKALDLHNCAVWMPDNDRREMHLTHELKPSSPNKLEVPIPISDPDVLEIRKSKGVLILRPDSALGAASGGQSGESGSVAAIRMPMLHVSNFKGGTPEMVETSYAILVLVLPNLNSRSWNSHEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQLXXXXSAMMASQARSSFQKVMSNGMRRPMHSILGLLSIFQEDNLRPEQKIIIDTMLRVSNALSSLINDVMEISSNDKGSFRLEMKPFHLHSMMREASCIAKCLCVHKGFGLEIDVHKALPGLVIGDEARSFQVILHLIGYLLNMYDKGTLIFRALLESDSGDKDDKGFGIWRSSVQNDYVYVKFTFQVTGITSESDVLNSARHYSGRRQYNNEPNEGLSFSMCKTLVQMMQGNIWMSPNSSGLAQGMTLLLKFQLGRSTFVLKDAPIPQFRGLKVLLADDDDVNRTVTKKLLEKLGCQVNAVSSGFQCLSAITASGNTIKIILLDLHMPEMDGFEVARRIRKFHSRNWPLIIALTASAEDDVREKCIQVGMHGLIRKPILLQDIADELRTVLLRAGEKL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00039 759 CDD REC_ETR-like 633 748 - -
Stsc60430g00039 759 CDD HATPase_ETR2_ERS2-EIN4-like 479 611 - -
Stsc60430g00039 759 PIRSF Ethylen_sen_hybr_HK 5 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Stsc60430g00039 759 FunFam Ethylene receptor 631 755 - -
Stsc60430g00039 759 SUPERFAMILY CheY-like 629 752 IPR011006 -
Stsc60430g00039 759 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Stsc60430g00039 759 Pfam Response regulator receiver domain 635 747 IPR001789 GO:0000160
Stsc60430g00039 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 438 IPR036097 GO:0000155|GO:0007165
Stsc60430g00039 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 27 755 - -
Stsc60430g00039 759 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Stsc60430g00039 759 Coils Coil 342 361 - -
Stsc60430g00039 759 Gene3D - 175 347 IPR029016 -
Stsc60430g00039 759 Gene3D - 633 758 - -
Stsc60430g00039 759 Gene3D - 364 438 - -
Stsc60430g00039 759 SMART REC_2 633 748 IPR001789 GO:0000160
Stsc60430g00039 759 Gene3D - 439 617 IPR036890 -
Stsc60430g00039 759 SMART gaf_1 187 346 IPR003018 GO:0005515
Stsc60430g00039 759 SUPERFAMILY GAF domain-like 190 339 - -
Stsc60430g00039 759 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Stsc60430g00039 759 FunFam Ethylene receptor 4 339 434 - -
Stsc60430g00039 759 ProSiteProfiles Histidine kinase domain profile. 380 617 IPR005467 -
Stsc60430g00039 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 442 599 IPR036890 -
Stsc60430g00039 759 Pfam GAF domain 189 336 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00039 Stsc-Chr60430 207696 211537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00039 34 757 Miscellaneous Gene Families AT3G04580 60.459 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60430g00039 GAF 9.9e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00039 K14509 - gmx:100805023 1148.27