Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00036 ATGGATTATTATTATTCATCATCATTCTCTGTTCCAACACCATACGACAATAACAACTACAACCAATTATCCCTTCCATTCAACGAAAATGACTCTCAGGAAATGCTTCTATGCGAGGTTCTCACACAGCAGGCTAGTGGTGCGGCCCCATCAAGCATGATGGTGGGGGTGCAGCCACATCAACCTGCAGAACCCCAAGTGGTAGAGGAGGTTTCTTCTTACAGAGGGGTGAGAAGGAGGCCATGGGGAAAGTACGCAGCCGAGATAAGGGACTCTACGAGGAATGGTGAGAGGGTGTGGTTGGGAACATTCGAGACGGCGGAGGAAGCTGCGTTGGCATACGACCAAGCCGCATTGGCAAGTAGAGGCTCAATGGCGGTGTTGAACTTCCCTGCAGAGATTGTTGTTGAGTCGCTAGAGAAGATGATGGTGCAGTGTGGTGGCTTCACTCAAGGTTGCTCTCCAGTGTTGGAGCTGAAGAAGAAGCATTCCATGAAGAGGAAGATGGACAAATGGGACAAGAAACTCTCCATGCTCAACAACAATAATGCGATGCTTTTTCAGGATTTGGAACAACTTCTTACTTTGTCATCGTCCCATGACCAATGA 609 0.4828 MDYYYSSSFSVPTPYDNNNYNQLSLPFNENDSQEMLLCEVLTQQASGAAPSSMMVGVQPHQPAEPQVVEEVSSYRGVRRRPWGKYAAEIRDSTRNGERVWLGTFETAEEAALAYDQAALASRGSMAVLNFPAEIVVESLEKMMVQCGGFTQGCSPVLELKKKHSMKRKMDKWDKKLSMLNNNNAMLFQDLEQLLTLSSSHDQ 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00036 202 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Stsc60430g00036 202 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Stsc60430g00036 202 Coils Coil 162 182 - -
Stsc60430g00036 202 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Stsc60430g00036 202 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Stsc60430g00036 202 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Stsc60430g00036 202 FunFam Ethylene-responsive transcription factor 2 72 133 - -
Stsc60430g00036 202 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Stsc60430g00036 202 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Stsc60430g00036 202 PANTHER DNA-BINDING DOMAIN 51 161 IPR044808 GO:0003700|GO:0009873
Stsc60430g00036 202 SUPERFAMILY DNA-binding domain 72 133 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00036 Stsc-Chr60430 189103 189855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00036 25 194 AP2-EREBP Transcription Factor Family AT3G23240 53.073 3.38e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc60430g00036 AP2 8.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00036 K14516 - gmx:100787732 177.563