Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00024 ATGGCTCCTTGCTGTGAGAATATGGGTTTAAAGAAGGGACCATGGACTGCTGAAGAAGATCAGATATTGATATCTTTCATTCACAGATATGGCCATGGAAACTGGCGTGCACTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGCTGGATAAATTACCTGAGGCCAGATATTAAAAGAGGGAAATTTAGCAAGGAAGAGGAAGATACTATTCTCAAGCTACATGCAGTTCTTGGAAATAGGTGGTCTGCCATTGCAGCAAGATTACAGGGTCGTACAGATAATGAAGTAAAGAATTTTTGGCACACTCATTTGAAGAAAAGGATTGAGAAAAGTGAAGTGCACAACAATGGCATCAGAAGTAAATACTCATATCCCTCACAAATCATCACCATGCCAAGAGTAGTAGCAGCAGCAATTGCACCAAGTAGTAGTAGTAGTAGTGCTGCTTCTAGCTTCAATGGGAAGAAGGTAGTGATTGCCAATGATGGTTTATCCTCAACCTCAAGGAATAATAGATCGAGTTCATCTCCTAATATCATTGCAGGACCAAGATTTTGCAGTGCAATATCCTCCTCTTCTGATGATACTACTACTACTTCAGGTGAAACCATGGGAAATCAGAATCATGATTCCATTCAGCTCACTGAAGAGATGGAATTTTGGTACAATATATTCATCAAATCAGGACAGCTATAG 714 0.4034 MAPCCENMGLKKGPWTAEEDQILISFIHRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHAVLGNRWSAIAARLQGRTDNEVKNFWHTHLKKRIEKSEVHNNGIRSKYSYPSQIITMPRVVAAAIAPSSSSSSAASSFNGKKVVIANDGLSSTSRNNRSSSSPNIIAGPRFCSAISSSSDDTTTTSGETMGNQNHDSIQLTEEMEFWYNIFIKSGQL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00024 237 Gene3D - 67 130 - -
Stsc60430g00024 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Stsc60430g00024 237 FunFam Myb transcription factor 9 65 - -
Stsc60430g00024 237 Gene3D - 11 64 - -
Stsc60430g00024 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 203 - -
Stsc60430g00024 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Stsc60430g00024 237 SMART sant 11 61 IPR001005 -
Stsc60430g00024 237 SMART sant 64 112 IPR001005 -
Stsc60430g00024 237 SUPERFAMILY Homeodomain-like 8 106 IPR009057 -
Stsc60430g00024 237 CDD SANT 67 110 IPR001005 -
Stsc60430g00024 237 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Stsc60430g00024 237 CDD SANT 14 59 IPR001005 -
Stsc60430g00024 237 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Stsc60430g00024 237 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Stsc60430g00024 237 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Stsc60430g00024 237 MobiDBLite consensus disorder prediction 170 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00024 Stsc-Chr60430 124187 125417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00024 2 231 MYB Transcription Factor Family AT2G31180 46.835 9.55e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60430g00024 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00024 K09422 - gmx:102663040 276.944