Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00023 ATGGTGGTGGTGATAGAGCATCAAGAGACTGAGGATTTAAATGCAAATCCCTCCAACAACCCCGTTGCAGGCAACGATGCTTCGGACGGCTTTGAAACAGCCAGCGACACCGACCTCCGCAGTGACACCGAAGGCGATGACATAGCTAACAGCCGTGAAGAACAGGATCATCCTGATCAACAGCAGCCGAAGAAAGCTAGGCCGGAACAGGATCCTGAGCAGAGTGTTTCTCCAAGTAATGGTTCTTCCGGTGATCCCTTGATCAATGAGGAATTGGAGCAGAAATTATTGGTTCAAGCAAATGAAGTAAAGACAGAAGGGAACAAGTTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACATGCTCTACAAGTTGCCCCTGAGGTGCCTTCATCGGTTGAAATACGCTCAATATGCCATGTGAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACTCGGTTAAAGAATGCACAAAAGCATTAGAACTGAATCCAGTGTACATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAGCTTGAACATTTTGAAGAGGCCATTGCTGGAAGGCCATTCGCCGACTTGA 609 0.4598 MVVVIEHQETEDLNANPSNNPVAGNDASDGFETASDTDLRSDTEGDDIANSREEQDHPDQQQPKKARPEQDPEQSVSPSNGSSGDPLINEELEQKLLVQANEVKTEGNKFFVDGKYEEALSQYEHALQVAPEVPSSVEIRSICHVNRAVCFQKLGKYDNSVKECTKALELNPVYIKALVRRGEAHESLNILKRPLLEGHSPT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00023 202 SMART tpr_5 141 174 IPR019734 GO:0005515
Stsc60430g00023 202 SMART tpr_5 100 133 IPR019734 GO:0005515
Stsc60430g00023 202 MobiDBLite consensus disorder prediction 11 32 - -
Stsc60430g00023 202 Pfam Tetratricopeptide repeat 143 172 IPR001440 GO:0005515
Stsc60430g00023 202 SUPERFAMILY TPR-like 100 189 IPR011990 GO:0005515
Stsc60430g00023 202 Gene3D Tetratricopeptide repeat domain 51 193 IPR011990 GO:0005515
Stsc60430g00023 202 MobiDBLite consensus disorder prediction 72 87 - -
Stsc60430g00023 202 MobiDBLite consensus disorder prediction 1 87 - -
Stsc60430g00023 202 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 36 193 - -
Stsc60430g00023 202 MobiDBLite consensus disorder prediction 33 71 - -
Stsc60430g00023 202 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00023 Stsc-Chr60430 116883 120508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00023 100 191 Calmodulin-binding Proteins AT3G25230 37.000 2.13e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00023 K24926 - gmx:100808386 221.476