Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00021 ATGGTGGTGGTGATAGAGCATCAAGAGACTGAGGATTTAAATGCAAATCCCTCCAACAACCCCGTTGCAGGCAACGATGCTTCGGACGGCTTTGAAACAGCCAGCGACACCGACCTCCGCAGTGACACCGAAGGCGATGACATAGCTAACAGCCGTGAAGAACAGGATCATCCTGATCAACAGCAGCCGAAGAAAGCTAGGCCGGAACAGGATCCTGAGCAGAGTGTTTCTCCAAGTAATGGTTCTTCCGGTGATCCCTTGATCAATGAGGAATTGGAGCAGAAATTATTGGTTCAAGCAAATGAAGTAAAGACAGAAGGGAACAAGTTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACATGCTCTACAAGTTGCCCCTGAGGTGCCTTCATCGGTTGAAATACGCTCAATATGCCATGTGAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACTCGGTTAAAGAATGCACAAAAGCATTAGAACTGAATCCAGTGTACATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAGCTTGAACATTTTGAAGAGGCCATTGCTGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATTCGCCGACTTGAGCCGCTTGCTGCAGACAAGCGGGAAAAGATGAAGGAAGAGATGATGGCAAAACTAAAAGAAATGGGAAATTCTGTCTTGGGCCATTTTGGGATGAGTGTTGATAACTTCAATGCAGTTCAAGATCCAAACACTGGTTCCTATTCCATCTCATTCCAGCGTTAA 807 0.4486 MVVVIEHQETEDLNANPSNNPVAGNDASDGFETASDTDLRSDTEGDDIANSREEQDHPDQQQPKKARPEQDPEQSVSPSNGSSGDPLINEELEQKLLVQANEVKTEGNKFFVDGKYEEALSQYEHALQVAPEVPSSVEIRSICHVNRAVCFQKLGKYDNSVKECTKALELNPVYIKALVRRGEAHESLNILKRPLLILEIDPSNDQARKAIRRLEPLAADKREKMKEEMMAKLKEMGNSVLGHFGMSVDNFNAVQDPNTGSYSISFQR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00021 268 SMART tpr_5 141 174 IPR019734 GO:0005515
Stsc60430g00021 268 SMART tpr_5 100 133 IPR019734 GO:0005515
Stsc60430g00021 268 SUPERFAMILY TPR-like 100 215 IPR011990 GO:0005515
Stsc60430g00021 268 Pfam Tetratricopeptide repeat 143 172 IPR001440 GO:0005515
Stsc60430g00021 268 MobiDBLite consensus disorder prediction 11 32 - -
Stsc60430g00021 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 37 268 - -
Stsc60430g00021 268 Gene3D Tetratricopeptide repeat domain 52 236 IPR011990 GO:0005515
Stsc60430g00021 268 MobiDBLite consensus disorder prediction 72 87 - -
Stsc60430g00021 268 MobiDBLite consensus disorder prediction 1 87 - -
Stsc60430g00021 268 MobiDBLite consensus disorder prediction 33 71 - -
Stsc60430g00021 268 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00021 Stsc-Chr60430 116341 120508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00021 100 238 Calmodulin-binding Proteins AT3G25230 35.099 3.87e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00021 K24926 - gmx:100808386 323.168