Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00019 ATGGCGAATAACATCAGAACGGGTGGTAAGAAGAGAAAACCCTGCCCCCCTAAAGAACCCGAAGATTGGTGCTTTGAATGCAAGGACGGTGGTGAAGTCATTGTGTGTGACTACAGGAACTGTTCGAAGGTTTATCACTCTGACTGTGTTCCTGTCAAGCCGGAGAATGGCAAATCTTGGATTTGTGCTTGGCATTATTGCTTTGTGTGCAAGGAGTCCTCGAAGTTTTATTGCCTTGGATGCGTAAACGCTGTGTGCAAAAACTGCATTGCTTCCTCAGAGTTTACCATTGTCAGGGGTGATAAAGGATTATGCTGTGACTGTGCGGAGCTAGTCAAAATTATCGAAACAAATTTGGAGTGTGACTCTGAGGGGAAAAAGATAAGCGTGGATGGAAGAGACACATATGAAGGTCTATTCAAGGAATACTGGGAAATTATTAAGTTAGACGAAGGATTAACTAGTGATGATTTCTTTTCTGCACAAACCAAGAAAACCAAAACGGTTAAAAATTCTCCGCTCCAAAGCGAAGTCATTGAAGTAGATAAAGAAAAACAGAATGACTCCATGTCATCTGATGACGATGATGTTCTTATGTATAAACACAACTCAACCAAAAGGAAGAAGTCCAATTCACTGAAACAGAATGACTCCATGTCATCTGATGATGATGATGTTCTTATGTATAAACACAACTCAACCAAAAGGAAGAAGTCTAATTCACTGAAACAGAATGACTCCATGTCATCTGATGACGATGATAAGTCCAATTCACTGGAGTTTATGGGATGGGGATCAAAACCTCTCCTTAGCTTCCTTGCATCCATTGGAAAATTTAGTACTGAACCACTGCCACAGTGGGGTGTACGAACTCTCGTGTGTGAATACATTGAGAAGAACAACCTCTATCTCGCACAAGACAAGAAGAAGTTCCTCCTTGATGAAAAGTTGTTTCCTATATTCAAGAAAAAGGTTATGTCAAAAAATCAAATATATCCTCTATTGGATCGTCACTATGCTGAAACATTGGGTGATAGAGATAGTGAAGAAAATAATGATGAAATCATAAGCACTCCTCCAGACAACTGTGTCAATGATCAGACTTCATGTAGGAAAAGGAGATTGTCAAGCATGAAAGGGAAACTTAAATTGGAAAAGGAGGATTTGTTTACCAAGGCTAGTTGTTTTGCATCCATAAGTGCCGAGAATATAAAACTTATCTACTTAAGACAAAGCTTGGTGCTAGAGTTATCTAAACAACCTGAAAGTTTTATGGGTAAGGTTGTTGGAGCCTTTGTTAGAGTTAAAATGGATTCCAGTGATTGTAAGCAGACAAGATCTTACCATCTAGTGAGAGTTACAGGTGTTGTGTCGGATAATGTTTTAAAGAGAGCTCTTTTGCAAGTCTCCTTCATGTCTAAAGCCGTTCCTGTCTCCGAGCTCTCTGATAATGACTTCACAGAGCAAGAATGTGAGGATTTGCGGCAAAAAGTGAAAGCCAACCTGCTGCAGAAACTAACTGTTGTGGAACTTCAAGAAAAGGCGAAAAGTCTTCATGAGGATATAACAAAGCATTGGATCGCAACTCGACTAATCGATTTGCAAAATCAAATTGACCGTGCAAACCTAAGAGGAAGACAAAGAGAAAAATTTGCCTTACTAGATGCAAGGGAAGACCTTCAACAGCCATGGAGGCAAGAACAAATGTTAAAGCGAGTTCCATCAGTTTCCCGAGAGTTTACACACAATGATCCTGAAGAGGACTACTAA 1770 0.3994 MANNIRTGGKKRKPCPPKEPEDWCFECKDGGEVIVCDYRNCSKVYHSDCVPVKPENGKSWICAWHYCFVCKESSKFYCLGCVNAVCKNCIASSEFTIVRGDKGLCCDCAELVKIIETNLECDSEGKKISVDGRDTYEGLFKEYWEIIKLDEGLTSDDFFSAQTKKTKTVKNSPLQSEVIEVDKEKQNDSMSSDDDDVLMYKHNSTKRKKSNSLKQNDSMSSDDDDVLMYKHNSTKRKKSNSLKQNDSMSSDDDDKSNSLEFMGWGSKPLLSFLASIGKFSTEPLPQWGVRTLVCEYIEKNNLYLAQDKKKFLLDEKLFPIFKKKVMSKNQIYPLLDRHYAETLGDRDSEENNDEIISTPPDNCVNDQTSCRKRRLSSMKGKLKLEKEDLFTKASCFASISAENIKLIYLRQSLVLELSKQPESFMGKVVGAFVRVKMDSSDCKQTRSYHLVRVTGVVSDNVLKRALLQVSFMSKAVPVSELSDNDFTEQECEDLRQKVKANLLQKLTVVELQEKAKSLHEDITKHWIATRLIDLQNQIDRANLRGRQREKFALLDAREDLQQPWRQEQMLKRVPSVSREFTHNDPEEDY 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00019 589 SUPERFAMILY SWIB/MDM2 domain 255 341 IPR036885 -
Stsc60430g00019 589 SMART PHD_3 23 66 IPR001965 -
Stsc60430g00019 589 Gene3D SWIB/MDM2 domain 250 349 IPR036885 -
Stsc60430g00019 589 MobiDBLite consensus disorder prediction 239 256 - -
Stsc60430g00019 589 Gene3D - 399 520 IPR036128 GO:0003677
Stsc60430g00019 589 SMART rtf1 398 500 IPR004343 GO:0003677
Stsc60430g00019 589 MobiDBLite consensus disorder prediction 210 232 - -
Stsc60430g00019 589 SUPERFAMILY FYVE/PHD zinc finger 19 71 IPR011011 -
Stsc60430g00019 589 MobiDBLite consensus disorder prediction 177 203 - -
Stsc60430g00019 589 CDD SWIB-MDM2_like 264 339 - -
Stsc60430g00019 589 ProSiteProfiles SWIB/MDM2 domain profile. 258 341 IPR003121 -
Stsc60430g00019 589 PANTHER OS01G0884500 PROTEIN 46 582 IPR045894 -
Stsc60430g00019 589 Pfam SWIB/MDM2 domain 273 338 IPR003121 -
Stsc60430g00019 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 113 IPR013083 -
Stsc60430g00019 589 Pfam Plus-3 domain 403 498 IPR004343 GO:0003677
Stsc60430g00019 589 MobiDBLite consensus disorder prediction 171 256 - -
Stsc60430g00019 589 ProSiteProfiles Plus3 domain profile. 398 523 IPR004343 GO:0003677
Stsc60430g00019 589 CDD PHD5_NSD 23 65 - -
Stsc60430g00019 589 SUPERFAMILY Plus3-like 399 521 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00019 Stsc-Chr60430 111147 115585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00019 21 90 PHD Transcription Factor Family AT3G14980 32.051 4.00e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Stsc60430g00019 Plus-3 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00019 - - adu:107492011 810.446