Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00013 ATGTCTTCATCTTCTCCTGTTCTCCCAACACCATTGGATAACAAGTACATGAAGCCCCCAGATTCGTTTCCGCTTTCGCCTGTAAGAGAAATGACTGCGAATCCATCCTCGATGCAATCTACACCGTCAAATTCCAACACCAGAAGTGCCGGACATACGTTTTCGTCCCCTGGTGTTGTCCCTTTTTCTTCAGCTTCGCAGCATGAAAGGCAGCATCAACCTTCTCCCTTTATTTCACAGACATTAGGTGAAGACAGTGTGTCTTCTGAGCTACATTCAGCATCATTCATTTCCCAACCTCAAGAAAGCGACGATATTTCCTGGGGACCGGATCCGTTTCAAGATATGCTTGGTTTCCCTGAGAATGTTTCAGTCCAGAATGATCAGGTGGAAAACGGCGCTTGTTATATAAATGATGACAATGTCAAAAAATCTGATTTTGGAGAGTGGGTTGATAAGTTAATGTCAATTGATGATTCTTATGACCCAAATTGGGGTCAGCTTCTTGGTGATGATAACGAATTAGAACCAAAACCAAAGCCCATCCAGGTTTTATATCCGCAGAATGCACCATCTAGAGAAGTTAAAGGCCTTCCTAGTTCTCCATCAACTGCATCCCAGACGAAGCCTCGAATGCGTTGGACACCGGAACTCCACGAGGCCTTTGTGGAAGCGGTGAATCAGCTTGGTGGCAGCGAGAAGGCTACTCCCAAGGGGGTCTTGAACCTCATGAAAGTTAAGGGCCTTACCATCTACCATGTAAAAAGTCACCTACAGAAGTATAGAACGGCCAGGTACAAACCTGAGACCCCAGAAGGAACTTCTGAGAAAAAGCTGAGTTCAATTGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATCACTGAGGCGTTGCGGTTGCAAATGGAACTCCAGAAGCGGCTTCACGAGCAACTTGAGATCCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAGCGCCTCCAGATGATGTTTGAGAAGCAGAGAGAGATGGGAGATAGCAAGTTTAAGGACTCATCCTCCTCCTTCCCCTTGGACGAGCCTTCTGCTCCGCCACCAAATCCTCAAGCAGACAATTCAGAATCTCCAAAACCAAAAGAGCAAAATGAGAAACTAGGAAACGAAAGTTGCATCACGAAAACCGTGCCTGGAGAAAGTCCTCAGGATGAAAGCATAAACCAGAAAATGGAAGATGAAGCTGAAGTTAGCAATGAACACAAGGTGGATGATGATCAGTGTGCTGCACCACCCACAAAACGGGTCAAGACTTGA 1302 0.4547 MSSSSPVLPTPLDNKYMKPPDSFPLSPVREMTANPSSMQSTPSNSNTRSAGHTFSSPGVVPFSSASQHERQHQPSPFISQTLGEDSVSSELHSASFISQPQESDDISWGPDPFQDMLGFPENVSVQNDQVENGACYINDDNVKKSDFGEWVDKLMSIDDSYDPNWGQLLGDDNELEPKPKPIQVLYPQNAPSREVKGLPSSPSTASQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVKGLTIYHVKSHLQKYRTARYKPETPEGTSEKKLSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKRLQMMFEKQREMGDSKFKDSSSSFPLDEPSAPPPNPQADNSESPKPKEQNEKLGNESCITKTVPGESPQDESINQKMEDEAEVSNEHKVDDDQCAAPPTKRVKT 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00013 433 MobiDBLite consensus disorder prediction 194 211 - -
Stsc60430g00013 433 FunFam Myb family transcription factor 208 266 - -
Stsc60430g00013 433 MobiDBLite consensus disorder prediction 384 400 - -
Stsc60430g00013 433 MobiDBLite consensus disorder prediction 1 115 - -
Stsc60430g00013 433 Pfam Myb-like DNA-binding domain 211 262 IPR001005 -
Stsc60430g00013 433 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 263 IPR006447 GO:0003677
Stsc60430g00013 433 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 200 406 IPR044848 GO:0003700
Stsc60430g00013 433 MobiDBLite consensus disorder prediction 339 433 - -
Stsc60430g00013 433 MobiDBLite consensus disorder prediction 401 427 - -
Stsc60430g00013 433 MobiDBLite consensus disorder prediction 189 211 - -
Stsc60430g00013 433 Gene3D - 208 267 - -
Stsc60430g00013 433 SUPERFAMILY Homeodomain-like 207 263 IPR009057 -
Stsc60430g00013 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 266 IPR017930 -
Stsc60430g00013 433 Coils Coil 297 317 - -
Stsc60430g00013 433 Pfam MYB-CC type transfactor, LHEQLE motif 296 340 IPR025756 -
Stsc60430g00013 433 MobiDBLite consensus disorder prediction 29 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00013 Stsc-Chr60430 76461 80093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00013 31 364 G2-like Transcription Factor Family AT3G04450 46.448 2.58e-86 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60430g00013 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00013 - - gmx:100803267 538.11