Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60430g00011 ATGGCTCCCAATCCAAGAGTTGCTCAGGCCTTTAGTGCTATGAAAGCATTAGGAATTTCTGCTGAAGAGGTGAAGCCGGTGTTGGCAGAATTGCTAAGAGTCTATGATAGAAATTGGGAACTTATTGAAGAGGACAATTATCGGACACTTGTAGATGCATACTTTGACTTCAAAGATGATAAGGGAACGGATGCTAAGAAAAAAGCTTCTGTCAATTTTCATGCTCGAGAAAGATCAAAACAGAAACTGCACTTGATAGATGATGATGATGATGAAGACCAGGTTTTGACAACAAGAAACAAGCCGAGCCAAAAGTTATCGGTTTCAAATAGGAAAACACCTCCAGGTACTTCTATGCAAGATAGCAGGCCCAGAACTAGTTCAGAAGCATCACATGCAAGGTTGATGAATGTAGAAAGGGTTTCCAATTCACCTTGCAAGGCAGCTAAATCTGCAGGGCACTCTGTTGATTATGAGAAAGAGCTAGTGAAACCCAGAACTAAGAAACCAAAGTTACAGACTCAGCATATTTCAACAAATCATAACGGATTATCTCATGCTTCCTCATCATGCAATAACAATGCCACAACTAGCACGGGAAATATCACTATTGCTTCTTCAGCCCAGGGAGAAGTTAAATTGTCTTTAAAGTGCAATGCTGCTTTGGCACAACCGAACTTCTGTAATCCTAGTTTGGATACTGTGATGAATTTCATGGAGGAGAAGTACCTCACGGCTTGCAAGACTCAGGACCCTCAGTTTTCAATGGTGAAGCTACTAGATGGTTTATGCAGGAGTTATCTGATGTTGGGACATCAAAAGAGATCAAATTTCAAGTCTTCCAGTTCCAGCAACTTGGCAGTTACTCAAGATGAAAGGAGTTCCTCTCATTTTATCAGTGACATAACAAGAGGTTCAGAAAAGGCAACTGTCTTTCTGCATCACTACCTTGTGCATGTGCCCGTGAAACTGGTGGTGAGTTTGCATACACTCCTCAAGGTGTACATGACTCGTGAGGGAAAGGGTTGGGGCCTTAGAACACTAGAGGATTTGCCTAAGGGTACTTTTGTATGTGAATACGTTGGGGAAATATTAACCAATACAGAGTTATACGAAAGGATTGTGCAGAGTAGTTGCAGCAATGACAGACATACATATCCCGTAACTCTTGATGCAGACTGGGGCTCAGAAGGGGTCTTGAAAGATGAGGAAGCACTTTGCTTAGATGCAACATATAATGGAAATGTTGGAAGGTTCATCAATCACAGATGCTTTGATGCGAACCTCATTGACATTCCTGTTGAAGTGGAGACTCCTGATCATCACTATTACCATCTTGCCTTCTTTACCGCCAAAAATGTGAGAGCCAATGAGGAGTTGACGTGGGATTATGGTATTGACTTTGATGATCATGACCATCCTATTAAAGCATTTCAATGTTCTTGTGGAAGCGCTTTCTGCGGTGATAAGAATCGGAAAGGCGAAGGAAAAGTAGAAAATCAGGTTCATGCATCTACAAGAATAAGTGCCTGA 1533 0.4168 MAPNPRVAQAFSAMKALGISAEEVKPVLAELLRVYDRNWELIEEDNYRTLVDAYFDFKDDKGTDAKKKASVNFHARERSKQKLHLIDDDDDEDQVLTTRNKPSQKLSVSNRKTPPGTSMQDSRPRTSSEASHARLMNVERVSNSPCKAAKSAGHSVDYEKELVKPRTKKPKLQTQHISTNHNGLSHASSSCNNNATTSTGNITIASSAQGEVKLSLKCNAALAQPNFCNPSLDTVMNFMEEKYLTACKTQDPQFSMVKLLDGLCRSYLMLGHQKRSNFKSSSSSNLAVTQDERSSSHFISDITRGSEKATVFLHHYLVHVPVKLVVSLHTLLKVYMTREGKGWGLRTLEDLPKGTFVCEYVGEILTNTELYERIVQSSCSNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVGRFINHRCFDANLIDIPVEVETPDHHYYHLAFFTAKNVRANEELTWDYGIDFDDHDHPIKAFQCSCGSAFCGDKNRKGEGKVENQVHASTRISA 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60430g00011 510 MobiDBLite consensus disorder prediction 99 131 - -
Stsc60430g00011 510 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 -
Stsc60430g00011 510 Gene3D - 1 60 IPR043017 -
Stsc60430g00011 510 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 331 497 - -
Stsc60430g00011 510 ProSiteProfiles SET domain profile. 330 465 IPR001214 GO:0005515
Stsc60430g00011 510 Pfam SET domain 342 465 IPR001214 GO:0005515
Stsc60430g00011 510 MobiDBLite consensus disorder prediction 85 131 - -
Stsc60430g00011 510 SMART set_7 330 471 IPR001214 GO:0005515
Stsc60430g00011 510 SUPERFAMILY SET domain 329 487 IPR046341 -
Stsc60430g00011 510 Gene3D SET domain 322 490 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60430g00011 Stsc-Chr60430 65165 70980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60430g00011 332 487 C2H2 Transcription Factor Family AT2G23740 37.267 4.98e-22 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc60430g00011 SET 5.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60430g00011 - - mesc:110620731 324.324