Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00042 ATGAAGTGTTTCTCTACTTGTTTCTCTATCAAACAAGAAACCAAACAAGAAGAAGTAGACTGGAATAAGGGTGATGATGGTGATGGAAGCTTTCGGGTGTTCAGTTACAGGGAATTGTCATCAGCCACCCGTGGCTTTCATCCCTCTCTCAAAATTGGTGAAGGAGGTTTTGGCTCTGTCTACAAGGGGGTGCTCCGGGATGGGACATTGGTGGCAGTGAAAGTGCTTTCCATAGAGGTGGAGTCCATGAGAGGGGAGAGGGAGTTTGTGGCTGAATTGGCTACTCTTGCAAATATCAAGCACCAAAACTTGGTCATTCTTAGAGGCTGTTGTGTAGAAGGAACAAAGAGATATCTAGTCTATGATCACATGGAGAATAACAACCTTTACCACACTTTCTTAGGTTCGGAGAAAAGTAGGATGAGATTCAATTGGGAAGCAAGAAAGGATGTGTCCATAGGTGTGGCCTCTGTTCTTGCTTTTCTTCATGAGGAACTTAAGCCTCATATTCTCCATAGAGATATCAAATCAAGCAACATCCTTCTTGATCGAGATTTCACACCCAAGGTCTCGGATTTCGGCCTCGCCAAGCTACTCAGAGATGAAAAGTCCTATGTCAGCACTCGAGTTGCTGGCACATTGGGCTATCTTGCTCCGGAGTATGCTAGTTCCGGACAAGTTTCGCGAAAATCAGATGTTTACAGTTTTGGAGTGCTGCTCTTAGAAATTGTTAGTGGAAGATCAGTGGTTGGTGTTTATCACGACATGGAACGTTTCATAGTAGAGAAGGCTTGGGCAGCATATGGAGAAAATGATGTGTTAAAAATGGTTGATCCAGTGTTAGATATGAAGTATCCTGTGGAGGAAGCAAAACGGTTCGTGATGGTGGGTTTGCTTTGTGTCCAAGAAACTGCAAAGCTTAGGCCACGGATGGCAGAGGTTGTAGAGATGTTGAAGAACAAGAAGGACATGGAAGGTGTTCAGATTTCGAAACCGGGTTTTGTTGAGGATCTAAGGAGCATTAGAATCAGGCAGCAGCAGCAAGTAGTAATGCATTCATCAGAAGAAGCTGCAACAAGTTCTTTATTGACTACCTCTACTCTTGCTCGTTAG 1113 0.4403 MKCFSTCFSIKQETKQEEVDWNKGDDGDGSFRVFSYRELSSATRGFHPSLKIGEGGFGSVYKGVLRDGTLVAVKVLSIEVESMRGEREFVAELATLANIKHQNLVILRGCCVEGTKRYLVYDHMENNNLYHTFLGSEKSRMRFNWEARKDVSIGVASVLAFLHEELKPHILHRDIKSSNILLDRDFTPKVSDFGLAKLLRDEKSYVSTRVAGTLGYLAPEYASSGQVSRKSDVYSFGVLLLEIVSGRSVVGVYHDMERFIVEKAWAAYGENDVLKMVDPVLDMKYPVEEAKRFVMVGLLCVQETAKLRPRMAEVVEMLKNKKDMEGVQISKPGFVEDLRSIRIRQQQQVVMHSSEEAATSSLLTTSTLAR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00042 370 Gene3D Phosphorylase Kinase; domain 1 7 123 - -
Stsc60429g00042 370 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Stsc60429g00042 370 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 360 - -
Stsc60429g00042 370 SMART serkin_6 46 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60429g00042 370 Pfam Protein kinase domain 49 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60429g00042 370 CDD STKc_IRAK 52 320 - -
Stsc60429g00042 370 ProSiteProfiles Protein kinase domain profile. 46 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60429g00042 370 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 124 330 - -
Stsc60429g00042 370 FunFam Serine/threonine-protein kinase receptor 13 123 - -
Stsc60429g00042 370 SUPERFAMILY Protein kinase-like (PK-like) 28 330 IPR011009 -
Stsc60429g00042 370 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Stsc60429g00042 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00042 Stsc-Chr60429 234206 236341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00042 34 321 Receptor kinase-like Gene Family AT1G53430 48.276 1.12e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60429g00042 Pkinase 7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00042 - - gmx:100813945 497.664