Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00041 ATGGGCAACGCATCGAGCAGCGGCGGCACCGCCCGTCGCGGACATGTTGTTGTTTCCAGAAGGACTCATCCACCGCCTCCTCCTCCGGTGGCGCCGCAGCCGGAGATCACCTCCAATCCCTTCCTGTATCCCGGAGGCAACCCGTACCCGTCTCAGTACCCGAACCAGAACCGTCCGATGCAATACCCGTATCCTTACCCCGCTTACTACCCTCCGCCGCCGACGGTGCCCTTCCCCCACCAGCCCCAGCACCAGCACCAGCCTCAAATGGGGGCCGGGTGGGTTGGAGGCCGGGGTTACCCTTGCGGGCCAATGGTGGCTCCTCCAGCACCTATCGTCGAGCACCAGAAGGCCGTGACAATCAGGAACGACGTCAATGTGAAGAAGGAAACGCTGAAGATCGAGCCTGATGACGAGAACCCTGGCCAATTCCTTGTCTCCTTCACGTTTGACGCCACGGTTTCTGGCTGCATCACAATTTATTTCTTTGCAAAAGAAAATGAAAGCTGCATTCTAACACCAATGAAAGAAAACCTCGCACCTGTGACTGTTAATTTTCAGCAAGGTCTTGGCCAGAAGTTTAGACAACCTGCTGGAAGTGGTATTGATTTTAAAATGTTTAATGAGACAGAGTTGTTGCAAGTGGGTGAGATGGATGTCTACCCTCTAGCAGTAAAAGCAGATGCGTCCTCTAGTAATCACAATGGATCAGATGAAACTACGACATCTAATACCAGAAACTCACAGATAACACAAGCAGTGTTTGAGAAGGAGAAAGGTGAATTCCGGGCGAAAGTCGTCAAGCAGATTTTGTGGGCAAATGGAATGAGGTATGAGTTGCAAGAGATATATGGCATTGGAAGTTCAGCAGAGACAGGTGCGGATGAGAGTGACCAAGGGAAAGAGTGCGTCATCTGTTTGACAGAGCCTCGGGACACTATTGTCCATCCCTGCCGACATATGTGCATGTGTAGTGAATGTGCAAAGGTTTTGACGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTCTGGAGATAAAGGTAGGGCCTGAGGAGTGA 1074 0.5149 MGNASSSGGTARRGHVVVSRRTHPPPPPPVAPQPEITSNPFLYPGGNPYPSQYPNQNRPMQYPYPYPAYYPPPPTVPFPHQPQHQHQPQMGAGWVGGRGYPCGPMVAPPAPIVEHQKAVTIRNDVNVKKETLKIEPDDENPGQFLVSFTFDATVSGCITIYFFAKENESCILTPMKENLAPVTVNFQQGLGQKFRQPAGSGIDFKMFNETELLQVGEMDVYPLAVKADASSSNHNGSDETTTSNTRNSQITQAVFEKEKGEFRAKVVKQILWANGMRYELQEIYGIGSSAETGADESDQGKECVICLTEPRDTIVHPCRHMCMCSECAKVLTFQTNRCPICRQPVERLLEIKVGPEE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00041 357 SUPERFAMILY RING/U-box 302 347 - -
Stsc60429g00041 357 MobiDBLite consensus disorder prediction 1 52 - -
Stsc60429g00041 357 ProSiteProfiles Zinc finger RING-type profile. 303 342 IPR001841 -
Stsc60429g00041 357 MobiDBLite consensus disorder prediction 21 35 - -
Stsc60429g00041 357 CDD mRING-HC-C3HC5_MGRN1-like 301 342 IPR045195 -
Stsc60429g00041 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 352 IPR013083 -
Stsc60429g00041 357 MobiDBLite consensus disorder prediction 229 249 - -
Stsc60429g00041 357 Pfam Zinc finger, C3HC4 type (RING finger) 301 347 - -
Stsc60429g00041 357 PANTHER MAHOGUNIN 1 352 IPR045194 GO:0061630
Stsc60429g00041 357 FunFam probable E3 ubiquitin-protein ligase LOG2 287 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00041 Stsc-Chr60429 229308 231979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00041 100 322 C3H Transcription Factor Family AT3G09770 61.304 6.26e-93 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00041 - - aprc:113862864 488.804