Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00037 ATGGAGTGCAGCTGCAAAGGTGAACTAGCGTTGGCGCACCAAGAGTGCGCGGTTAAATGGTTCAGCATCAAAGGTAACAGAACATGTGATGTGTGCAAGCAACAAGTTCAGAATCTACCTGTCACTCTTTTACGAATTACGAGTACTCGTGCACCAAACTTCTTGATAAGTAGCCAAGGTCAGCAATACAGGGTTTGGGAAACTGTTCCAATTCTTGTGGTTATCAACATGATGGCTTACTTCTGTTTTGTTGAGCAGCTTCTTGTTTCAAATATGGGGTCTGGTGCCATTGGGATATCTCTCCCATTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACATCAACAACAATGGCGAGGAGAAACCATGTATGGCTTTATGCTATTGCCCAATTTGCTATGGTGTTTCTTGCTGGACGTCTTTTCTATTCACTGCTTCATGTGCAAGCAGTGCTATCTATGCTACTTGCTACGTTCACTGGGTTTGGAGCTGTAATGTGTGCGGCCTCTGTTCTGTTTGAGTTTCTCAAGTGGAGGAGGAGATGGTTTACTCAGTTGAATCAAAATCAGCATGGTTCCCAAGATGTGGTTGTACCACCAACTCATCAATCATCTGCAACAACCACATAA 630 0.4381 MECSCKGELALAHQECAVKWFSIKGNRTCDVCKQQVQNLPVTLLRITSTRAPNFLISSQGQQYRVWETVPILVVINMMAYFCFVEQLLVSNMGSGAIGISLPFSCILGLLASMTSTTMARRNHVWLYAIAQFAMVFLAGRLFYSLLHVQAVLSMLLATFTGFGAVMCAASVLFEFLKWRRRWFTQLNQNQHGSQDVVVPPTHQSSATTT 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00037 209 SUPERFAMILY RING/U-box 2 36 - -
Stsc60429g00037 209 Pfam RING-variant domain 2 32 IPR011016 GO:0008270
Stsc60429g00037 209 ProSiteProfiles Zinc finger RING-CH-type profile. 1 39 IPR011016 GO:0008270
Stsc60429g00037 209 PANTHER OS02G0165000 PROTEIN 1 197 - -
Stsc60429g00037 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 41 IPR013083 -
Stsc60429g00037 209 SMART ringv_2 1 33 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00037 Stsc-Chr60429 210679 211951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00037 3 76 C3H Transcription Factor Family AT2G37950 36.486 3.68e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00037 - - gmx:100783117 303.523