Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00034 ATGCTTAGTGTTATGAGCTTGTCGTTGCTACCGATGGATTCGGTAGCGTGCAGGGGTTTTCTTTACGCGCTCTTTATACTCAACTTTGTTCTCGTTTGCCAGCTCATTCTCCTTCACCCTCTTGTTTCTGCTTCAGGAGGAAAATCTGGAAATGCTGCTGAGTTATTTGAGAAGGTATCAGAAAGTATAAAAGTTAAACATTATACTGAGGCACTTAATGATCTAAATGCTGCGATAGAGGCAGATCCAAATCTTTCTGAAGCATATCTATTCCGTGCATCAGTTCTTCGTCAGTTGTGCAGATATGAACAATCAGAGGGGAGCTACAAGAAGTTTTTGGAGCTTAAACCTGGACACTCAACTGCAGAAAAGGAGCTCTCCCAGCTTTTGCAGGCTAAGAGTGCCCTAGAAACAGCTCGGTCCCTTTTTGGTTCAGGCAACTTCACAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGCTTGCACCGAGGCCAAGCTTCTGAAAGTGAGGTTATTGATAGCTGATAAAGAGTATGAAAGTGCCATAGCCGAGTCTGGGTTCCTCCTCAAGGAAGATGAAAATAATTTAGAGGCGTTGTTGTTGCGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACCAGGCACTACCAGAAAGGCCTCCGCCTTGATCCAGAGCACAGTGAACTAAAGAAAGCATATTTTGGATTGAAAAATCTACTAAAAAAGACTAAAAGTGCTGAAGATAATGCAAGTAAGGGTAAGCTCCGGGTGGCAGTGGAGGAATTCAAAACTGCACTTAAAGTTGACCCCGATCATCTTGCACATAATGTAAATCTTCATTTAGAATTATGTAAAGTCCTGGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAATGAAGCTCTTAAAATCAATGAGGAACTTCTTGAAGCCCTTGTTCAGAGGGGAGAAGCTAAACTTCTTATAGAAGATTGGGAGGGAGCTGTTGAGGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGACATGAATATCCGTGAAGCAGTAATGAGGGCTGAGAAGGCTCTGAAGCTGAGCAAACGCAAGGATTACTACAAGATTTTGGGAATTTCAAAAACAGCTTCAGCCCCCGAGATAAAACGTGCATACAAGAAACTTGCTTTGCAATGGCACCCAGATAAGAATGTAGAAAATAGGGAAGAAGCAGAGAATAAGTTCCGAGAAATCGCTGCCGCATATGAGGTACTCAGTGACGAAGATAAACGCACAAGATACGACAGAGGGGAGGACCTTGAAGACATGAGCGGCGGTGGCGGGGGTGGTGGGTTCAACCCATTTGGTGCCGGTGGGTTTGGTGGACAGCAGTATCACTTCACCTTCGATGGTGGCTTTCCCGGGGGTGGTGGTGGGTACGAGTTCCATTTTTGA 1458 0.4396 MLSVMSLSLLPMDSVACRGFLYALFILNFVLVCQLILLHPLVSASGGKSGNAAELFEKVSESIKVKHYTEALNDLNAAIEADPNLSEAYLFRASVLRQLCRYEQSEGSYKKFLELKPGHSTAEKELSQLLQAKSALETARSLFGSGNFTKSLEYIDKVVLVFSPACTEAKLLKVRLLIADKEYESAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSAEDNASKGKLRVAVEEFKTALKVDPDHLAHNVNLHLELCKVLVKLGRGKDALDSCNEALKINEELLEALVQRGEAKLLIEDWEGAVEDLKSAAQKSPQDMNIREAVMRAEKALKLSKRKDYYKILGISKTASAPEIKRAYKKLALQWHPDKNVENREEAENKFREIAAAYEVLSDEDKRTRYDRGEDLEDMSGGGGGGGFNPFGAGGFGGQQYHFTFDGGFPGGGGGYEFHF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00034 485 Gene3D DnaJ domain 371 481 IPR036869 -
Stsc60429g00034 485 SMART tpr_5 86 119 IPR019734 GO:0005515
Stsc60429g00034 485 SMART tpr_5 319 352 IPR019734 GO:0005515
Stsc60429g00034 485 SMART tpr_5 201 234 IPR019734 GO:0005515
Stsc60429g00034 485 SMART tpr_5 285 318 IPR019734 GO:0005515
Stsc60429g00034 485 SMART tpr_5 52 85 IPR019734 GO:0005515
Stsc60429g00034 485 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Stsc60429g00034 485 SUPERFAMILY Chaperone J-domain 367 475 IPR036869 -
Stsc60429g00034 485 CDD DnaJ 373 428 IPR001623 -
Stsc60429g00034 485 SUPERFAMILY TPR-like 65 368 IPR011990 GO:0005515
Stsc60429g00034 485 Gene3D Tetratricopeptide repeat domain 50 370 IPR011990 GO:0005515
Stsc60429g00034 485 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Stsc60429g00034 485 FunFam DnaJ domain containing protein 39 370 - -
Stsc60429g00034 485 Coils Coil 119 139 - -
Stsc60429g00034 485 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Stsc60429g00034 485 SMART dnaj_3 372 431 IPR001623 -
Stsc60429g00034 485 Coils Coil 409 429 - -
Stsc60429g00034 485 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 485 IPR044620 -
Stsc60429g00034 485 FunFam DnaJ subfamily C member 7 371 482 - -
Stsc60429g00034 485 Pfam Tetratricopeptide repeat 261 317 - -
Stsc60429g00034 485 Pfam Tetratricopeptide repeat 202 234 IPR013105 -
Stsc60429g00034 485 PRINTS DnaJ domain signature 375 393 IPR001623 -
Stsc60429g00034 485 PRINTS DnaJ domain signature 431 450 IPR001623 -
Stsc60429g00034 485 PRINTS DnaJ domain signature 411 431 IPR001623 -
Stsc60429g00034 485 PRINTS DnaJ domain signature 393 408 IPR001623 -
Stsc60429g00034 485 Pfam DnaJ domain 373 436 IPR001623 -
Stsc60429g00034 485 Pfam Tetratricopeptide repeat 65 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00034 Stsc-Chr60429 197450 201887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00034 369 436 C2H2 Transcription Factor Family AT1G74250 45.833 1.51e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00034 K09523 - gmx:100781496 749.199