Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00027 ATGTTGCCCGGTGACCCCTTTTCTTCGCTCTCTACTTCTATAGCTGCTGGATTCTCCCAACACCAAAACCCAATCTCCATCGCAAACCCTAACCCTAAACCTAAACCTAATACTAATACTACTAATAATAATAATAATCCCCCTCCACCAGCCACCACCACCAACAAGAAGAAAAGAAACCTTCCAGGAACACCAGATCCAGATGCGGAAGTCATTGCTCTCTCGCCGAAGACGCTCATGGCGACGAACCGGTTCATCTGCGAGATATGCAACAAAGGGTTCCAGAGGGATCAGAACCTTCAGCTTCACAGGAGAGGACACAACCTGCCATGGAAGCTGAGACAGAGGTCCAACAAGGAGGTGAAGAAGAAGGTGTACATCTGCCCGGAGAAGACCTGCGTCCACCACGAGCCCGCGAGGGCGCTGGGCGACCTCACCGGGATCAAGAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAGTACGCCGTCCAATCTGATTGGAAAGCTCACACCAAAACATGCGGCACCAGAGAATATAAATGTGACTGCGGCACCCTCTTTTCCAGGAAGGATAGCTTTATCACGCACAGAGCATTTTGTGATGCACTGGCGGAAGAAAGCGCGAGGCTGAACTCGGTAACGACGTCGACGAATTTGAGTTTCAAGAGCGAAGAGGTAACAACAACACAGCAGGGTGGAGTTGGATTTCGATTTGATTTCAATAACGAAATGGGAATTGGAGGAATGGGAATGGTTGGTGCTGCAGCAGCAGAACAAGAACAGATTATTAGGCCAAACTTGTCACTGTGGTTGAACCAACAACAACAGGGAAACAACCACCCTCATCATCATCAATTTGAAATGCCATCATCATCATCAACCTCCCATCATCATCATCACCAAGCTATTATGCATATGCCTATGCCTATGTTGCCTAATGATCATTTTGGGATGCCTGCTCCTAATACCAATTCATGTATTGGGAAAAAAGTATCATCATCATCATCAGAAGTAGTAGTGGTAGCTGATCATAATTCAAATTTGGCATCTATGTCAAAGTCACCTTCATCTTCTTCATCAGCTTATTCTCCTATGTCAGCAACTGCGCTTCTTCAGAAGGCAGCGCAAATGGGGTCCACCAGCAACAACCCTTCAACTTTCAGTGCCAGTTTTGGACTAATGACCTCTTCACCTTCCATTCAGACCAATAATAATAATAATAATAATGCAAACCAAAACCAACAGGGAAGAAGAATTGATCATCATCATCATCAGAGTTTTAGCGCATTAATGCATCCCTCACAAAGTTTTGATGATCAGTTCTTGAGTAATAATAATAACAACAATTTTACAAGAGACTTTCTTGGCATGAGTAGAGGACCGTTTCTACCACAAGAGCTAGCAAAGTTTGCTTCATCAGTAGGTTCATCATCAATGGGGTTGACCCAATTCACTACAAGCGCAACACATCAATGA 1503 0.4504 MLPGDPFSSLSTSIAAGFSQHQNPISIANPNPKPKPNTNTTNNNNNPPPPATTTNKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKTCVHHEPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLNSVTTSTNLSFKSEEVTTTQQGGVGFRFDFNNEMGIGGMGMVGAAAAEQEQIIRPNLSLWLNQQQQGNNHPHHHQFEMPSSSSTSHHHHHQAIMHMPMPMLPNDHFGMPAPNTNSCIGKKVSSSSSEVVVVADHNSNLASMSKSPSSSSSAYSPMSATALLQKAAQMGSTSNNPSTFSASFGLMTSSPSIQTNNNNNNNANQNQQGRRIDHHHHQSFSALMHPSQSFDDQFLSNNNNNNFTRDFLGMSRGPFLPQELAKFASSVGSSSMGLTQFTTSATHQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00027 500 FunFam protein indeterminate-domain 12-like 64 132 - -
Stsc60429g00027 500 MobiDBLite consensus disorder prediction 383 424 - -
Stsc60429g00027 500 Gene3D Classic Zinc Finger 63 138 - -
Stsc60429g00027 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 481 IPR031140 -
Stsc60429g00027 500 MobiDBLite consensus disorder prediction 283 310 - -
Stsc60429g00027 500 Gene3D Classic Zinc Finger 139 218 - -
Stsc60429g00027 500 MobiDBLite consensus disorder prediction 383 428 - -
Stsc60429g00027 500 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Stsc60429g00027 500 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Stsc60429g00027 500 MobiDBLite consensus disorder prediction 1 68 - -
Stsc60429g00027 500 MobiDBLite consensus disorder prediction 283 306 - -
Stsc60429g00027 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Stsc60429g00027 500 Pfam Zinc-finger double-stranded RNA-binding 85 107 IPR022755 -
Stsc60429g00027 500 SMART c2h2final6 161 181 IPR013087 -
Stsc60429g00027 500 SMART c2h2final6 126 156 IPR013087 -
Stsc60429g00027 500 SMART c2h2final6 85 107 IPR013087 -
Stsc60429g00027 500 MobiDBLite consensus disorder prediction 1 60 - -
Stsc60429g00027 500 SUPERFAMILY beta-beta-alpha zinc fingers 84 181 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00027 Stsc-Chr60429 173168 175197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00027 1 480 IDZ Gene Family AT5G03150 45.505 3.87e-127 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60429g00027 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00027 K25870 - gmx:100801182 450.284