Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00024 ATGTATGGTTCAAAGTTCAAAGTGATTGGATCAATAGATGTTTTGGCTGAACGTGGTGCAGAGATAGACCTTTACAAGTTCAATCCATGGGACCTTCCAAGCAAAGCTTTGTTTGGGGAAGAAGAGTGGTATTTCTTTACTCCAAGGGAGAGGAAGTACCCAAATGGAGTGAGACCAAATAGAGCAGCAGGTGCAGGTTACTGGAAGGCAACTGGAACTGACAAACCAATTATCACTTCATGTGGTTTGAAGAGCATTGGAGTCAAGAAAGCTCTTGTCTTCTACAAGGGACGTCCTCCAAAGGGTTCTAAAACTGATTGGATCATGCATGAGTATAGATTGCATGATTCAATCCTCTCCAATTCCCTCAAAAGAACCTCCATGAGAGGCCGGCTTGACTCAGCGGTAAGCTCACTTACCGTGGAGTTTAAGGTCGTGGGTTCGAACAGCCTCTCTACGAAAGTAAGGCTTGATGAGTGGGTGCTATGCCGGGTGAGACAGAAAACAGGTAGCCCAAGAAGCACTTTTGAAGATCCAAATGAACTGATTTATGAACCAACAAAAAATATTCATCATCAACAAATGAATGATGAGAACTTCAATAATAATCCTGAACCATCCGTAGTAAAAACCTCAATTGTGAACAATGAATTTCCAATGTTACCTTATATTCTGGCGTCTAGGAGTACTTTGCCTAACTCCATTGGTGTGTCCTCAAGCACAGGCTTTGTCAGAAATTATGGTTCAGTTCATGATGAAGATCATCATCCCAACAACTTGAATGTAATTGGAGCACAGTTCTTATTAGCATCTGCAATGGAGAGCTTGTATAACACTAATAATAATCCTCTGAAGAGAAAATCCATTGAAGAAGAAGAAGAAAAAAACCATTTGGAGTATGATCCCCCAAATAAGAAAATAAGGGTAGAACTCGTTGATAATAATGGTGATGATAAGGCAACAAGTGTTGTGATGGATACAAGCAAAGGCTACAATAATAATTTTGGCTACTTTGATCAGTGGAATTCAATCACACAACCTCAAGAGCTTAACAGCTTAGCCTTCATGGGATATTCATGA 1080 0.4028 MYGSKFKVIGSIDVLAERGAEIDLYKFNPWDLPSKALFGEEEWYFFTPRERKYPNGVRPNRAAGAGYWKATGTDKPIITSCGLKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHDSILSNSLKRTSMRGRLDSAVSSLTVEFKVVGSNSLSTKVRLDEWVLCRVRQKTGSPRSTFEDPNELIYEPTKNIHHQQMNDENFNNNPEPSVVKTSIVNNEFPMLPYILASRSTLPNSIGVSSSTGFVRNYGSVHDEDHHPNNLNVIGAQFLLASAMESLYNTNNNPLKRKSIEEEEEKNHLEYDPPNKKIRVELVDNNGDDKATSVVMDTSKGYNNNFGYFDQWNSITQPQELNSLAFMGYS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00024 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 269 - -
Stsc60429g00024 359 Pfam No apical meristem (NAM) protein 21 114 IPR003441 GO:0003677|GO:0006355
Stsc60429g00024 359 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Stsc60429g00024 359 Gene3D NAC domain 6 171 IPR036093 GO:0003677|GO:0006355
Stsc60429g00024 359 ProSiteProfiles NAC domain profile. 1 168 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00024 Stsc-Chr60429 153768 157002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00024 20 177 NAC Transcription Factor Family AT1G61110 59.494 8.13e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60429g00024 NAM 7.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00024 - - cam:101491216 356.295