Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00022 ATGGGTCATAGACACATATATGGTGCACCTCCAGTGTTTGATGGTGAGCCTGACCAAAGTTGGAGTCATATGCATGCTGATCAGCATTATGTGCACCTTGGTAGGACTAACACTTCTGAGAATGGTTCCTTTATTTATCCTGTTGAAAACATGTCCATAGATAGCATTTCTTTCCCCTCTCAGTGGAATTCTGCTACAAGGTCAAATGGTTATGCATCCTCAAGTCTAAACAATGAAGTAACTCCTCATCAATCAGATGGATCAGGGTCTTCTAATGATCATTTTACACATCCCACTACTGCTGGATCTTTCTTTGCTGTGTCCGAAAACTATACACACCACCCTTCTTCTTCTTCCAATTATGACAGGCAAGCCTTCCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGGCGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTCCAGTCCATGAGAGAGGCAGTTCAAGCAGATATTTCAATCCTGGGAGTTCAACTGATCTTTCAATATCTTCAGAATTAAGGCCAGAGAAGCCAAATATGGATTCTCAATATATGCCTTGGGATCATGTTACTATGACGCCTGCATTTAGAGGTGGTGGTCTTTCAATAAGGGGAGAGGGTTCTTTAAGGAATGTGAGGAGTCGTTCTACGCTTGCCTTGGAACCGAATCTGGCTAGGACCCATTTAGCAAGTAGTCAGTCACACAACTCCTTCACTGCTGTTCCACCCGTTGAGCATTCTAGCATGGTGGATCTGTCAGGTCAGACATCTACCACTTTGACTAGGGATTGGAGCCAAATGAACACATCTGCTGCTCATGGAAGGGTATTATTATCAGATGCAAGTGCTTTTAATCTTGAACCTAGTCACTTCCTTGTTGGAAGTAGTGCTACTGCTAGCAATGCTTCTGTGGATGTTGGAGGTTTCCATCACGAATTTGTTACAAGCCGAAACCCTGTTGCTCCCCCAATTTTTCATAATAATCCAACTCAAACTGCTAGAGGAGTTCGAAGTAACTACGCTCAGAGGTTGACTCCAGCTTTTAGGGCTTCTTCAGGCCTACGCTTGGGACATGTGACACCTTCAGATGATGGGTTGCCTATGGTAGCTGAAAGTTACTCCTCTAGACATCCAAGGCCTTTGACCACCATCGGTTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATATCTAGTGATAGATACAGATCATTAGCTGATGAGGGTTTCATGATTGTTGAGCGAGCATCACTCTATGGTCCAAGAAATTTGCATGATCAACACAGGGATATGAGGATGGACATAGACAACATGAGTTATGAGGACCTACTTGCACTTGGCGAGAGGATTGGGCATGTGAATACAGGGTTATCTGAAGATTCGTTTTCCAAGTGTTTGACAGAAACCATATATTGTTCATCTGAGCAAAGCCAAGATGAAGGAAATTGCGTTATCTGTCTTGAAGAGTACAAGGACAGGGATGATGTTGGGACACTTAAAACATGTGGACATGATTACCATGTGAGCTGCATTAAGAAGTGGTTATCTATGAAGAAATTGTGCCCTATCTGTAAAGCTTCTGCTTTACCTGAGGATACAAAGGATAAATAA 1626 0.433 MGHRHIYGAPPVFDGEPDQSWSHMHADQHYVHLGRTNTSENGSFIYPVENMSIDSISFPSQWNSATRSNGYASSSLNNEVTPHQSDGSGSSNDHFTHPTTAGSFFAVSENYTHHPSSSSNYDRQAFHVDGGFIDLTMGSGRGPHKRKSPGIPPVHERGSSSRYFNPGSSTDLSISSELRPEKPNMDSQYMPWDHVTMTPAFRGGGLSIRGEGSLRNVRSRSTLALEPNLARTHLASSQSHNSFTAVPPVEHSSMVDLSGQTSTTLTRDWSQMNTSAAHGRVLLSDASAFNLEPSHFLVGSSATASNASVDVGGFHHEFVTSRNPVAPPIFHNNPTQTARGVRSNYAQRLTPAFRASSGLRLGHVTPSDDGLPMVAESYSSRHPRPLTTIGWRNGDRNGRSRISSDRYRSLADEGFMIVERASLYGPRNLHDQHRDMRMDIDNMSYEDLLALGERIGHVNTGLSEDSFSKCLTETIYCSSEQSQDEGNCVICLEEYKDRDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALPEDTKDK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00022 541 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 453 534 - -
Stsc60429g00022 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 82 534 IPR045191 GO:0061630
Stsc60429g00022 541 SUPERFAMILY RING/U-box 478 534 - -
Stsc60429g00022 541 MobiDBLite consensus disorder prediction 67 97 - -
Stsc60429g00022 541 MobiDBLite consensus disorder prediction 161 179 - -
Stsc60429g00022 541 CDD RING-H2_RNF24-like 488 533 - -
Stsc60429g00022 541 Pfam Ring finger domain 487 530 IPR001841 -
Stsc60429g00022 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 534 IPR013083 -
Stsc60429g00022 541 ProSiteProfiles Zinc finger RING-type profile. 488 530 IPR001841 -
Stsc60429g00022 541 SMART ring_2 488 529 IPR001841 -
Stsc60429g00022 541 MobiDBLite consensus disorder prediction 137 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00022 Stsc-Chr60429 136260 143172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00022 1 540 C3H Transcription Factor Family AT2G37150 41.398 1.08e-103 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00022 - - gmx:100803627 900.197