LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60429g00013	ATGGCAAACGACTCGTCGTTTTTGTTCTCCGGCATTCGTTTCGACAGAAAGAAGTTCGGAAACGACATTGCCAGGTTCGGGAACAAGAACAAACCCACTGATGACGATACTTCCCTCAAGATTACGGACCCCGTTCAACTCCAAACCGAGAAAACGACGCCGGAGAAACCACCTTCTTCCAAGAAGCGGAAGCGCAAGGGAACCGCTTCTGAGGCGGTTGAAGGATTCAGTGTATTTAGAAGTTCTGCTTCTGCGGCGGAGCCTGCGAATGATGCAGTGAAAGCTGATGATGATGAGGCCATTCAGCTGAAGAAGGAACACAATAGGCAAATTGAGCGAGATGCTATATTCAGGAAGAAGAATAACATCCATGTGGCTGGCTATAACGTGCCATCCCCGCTTCAAAGTTTTGATGAATTGAAAACTAGATACAAATGTCCCAGATATTTATTGCGCAATGTCGCAGAACTTGGATTCAAAGAACCAACTCCAATCCAAAGGCAGGCTATTCCAGTACTTTTGCAGGATCGCGAATGCTTTGCTTGCGCACCAACTGGCTCTGGAAAAACCTTCGCATTTGTGTGTCCTATGCTTATGAAGCTCAAGGGACCAGAAAAGGGTGCCATTCGAGCTGTTATACTTTGTCATACGCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAACTTGCCAAGGGAAAAAAGTTTCGTATCAAGTTAATGACTAAACATCTTTCTAGAAATGCTGATTTTTCTAAATTTCCATGTGATATACTTATATCCACGCCACTTCGTTTACGCTTGGCTATCCGAAGGAAGAAAGTTGATCTCAGCAGAGTTGAGTTTCTTGTCTTGGATGAGTCAGATAAGCTGTTTGAGCCTGAACTGTTTAAGCAGATTGATTCTATTACCAAAGCATGTTCAAATCCCTCAATAATACGCTCACTATTCAGTGCCACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAGCTCATGCATGATGCTGTTCGGGTAATTATTGGCAGAAAGAATATGGCTTCTGAAACAATTAAGCAGAAGTTGATTTTTACTGGAAGTGAAGAGGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCAGAGAGTCTAAATCCTCCAGTATTGCTCTTCGTGCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGACAATATTAGAGTGGATGTCATCCATTCTGATTTGTCTCAAGAACAGAGAGAAAATGCTGTTGATAACTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGTGTGAACTGTGTTATCAATTATGATTTCCCGGATTCAGCTGCCGCATATATCCACAGGATTGGTCGATCTGGCAGAGCAGGGAGGGCAGGAGAGGCAATTACGTTGTACACAGAGGATGACATTCCATTCTTGCGGAATGTTGCTAATTTAATGGCAGCATCAGGATGTGAGGTTCCATCCTGGCTCATGGACTTGCGTAAAAAGAAGTGGAGGAAACACCGGCCAAAAAGAGACTCAATCTCAACCAAACCAGATATATAA	1599	0.4359	MANDSSFLFSGIRFDRKKFGNDIARFGNKNKPTDDDTSLKITDPVQLQTEKTTPEKPPSSKKRKRKGTASEAVEGFSVFRSSASAAEPANDAVKADDDEAIQLKKEHNRQIERDAIFRKKNNIHVAGYNVPSPLQSFDELKTRYKCPRYLLRNVAELGFKEPTPIQRQAIPVLLQDRECFACAPTGSGKTFAFVCPMLMKLKGPEKGAIRAVILCHTRELSAQTYRECKKLAKGKKFRIKLMTKHLSRNADFSKFPCDILISTPLRLRLAIRRKKVDLSRVEFLVLDESDKLFEPELFKQIDSITKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIIGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLLFVQSKERAKELYGELAFDNIRVDVIHSDLSQEQRENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITLYTEDDIPFLRNVANLMAASGCEVPSWLMDLRKKKWRKHRPKRDSISTKPDI	532

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60429g00013	532	MobiDBLite	consensus disorder prediction	39	54	-	-
	Stsc60429g00013	532	Gene3D	-	88	339	IPR027417	-
	Stsc60429g00013	532	MobiDBLite	consensus disorder prediction	21	71	-	-
	Stsc60429g00013	532	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	139	167	IPR014014	GO:0003724
	Stsc60429g00013	532	CDD	DEADc_DDX52	150	343	IPR044764	GO:0003724\|GO:0005524\|GO:0030490
	Stsc60429g00013	532	Gene3D	-	340	516	IPR027417	-
	Stsc60429g00013	532	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	92	518	-	-
	Stsc60429g00013	532	Pfam	DEAD/DEAH box helicase	163	327	IPR011545	GO:0003676\|GO:0005524
	Stsc60429g00013	532	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	170	340	IPR014001	-
	Stsc60429g00013	532	Pfam	Helicase conserved C-terminal domain	371	473	IPR001650	-
	Stsc60429g00013	532	SMART	ultradead3	158	355	IPR014001	-
	Stsc60429g00013	532	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	351	512	IPR001650	-
	Stsc60429g00013	532	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	209	491	IPR027417	-
	Stsc60429g00013	532	CDD	SF2_C_DEAD	352	482	-	-
	Stsc60429g00013	532	MobiDBLite	consensus disorder prediction	21	38	-	-
	Stsc60429g00013	532	SMART	helicmild6	392	473	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60429g00013	Stsc-Chr60429	86528	90830	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60429g00013	133	511	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.709	3.94e-54	186

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60429g00013	K14779		-	gmx:100800969	852.432