Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00011 ATGGGGAGAAAAGGGAATTGGTTTTCTTCTGTGAAGAAAGCTCTCAGTCCTGACTCAAAGGAGAAGAAAGAACAGAAATCAAAGAAGAAATGGTTTGGGAAACAGAAATTGCAGAGTTCAGGCTCATACCAGGAATCTGATAAGACACCACCTCTTCTGCCACCAGAAGATGTTAAATTGACTGATCTTGAAATTGAAAGCAGTCATGATCGCGTCGTCGAAGTTGCAACTGCTAAAGATGTTGAGGAACCTGTTCCTGTTGTTGCAGTTCAGGCACCGGTGGTTAGGGTTGAAGCTGCTACTACCAGCCATACAATTGCTCGTTTCGCTGGAAAATCGAAGGATGAAGTGGCAGCAATCAAGATTCAAACAGCTTTCCGGGGATACTTGGCAAGAAGAGCACTGCGGGCTTTAAGAGGGCTAATTCGTTCTCGGAGGATCAGAATGCTAGAGGAGAACCAGGCTCTGCAGCGACAGCTCTTGCAGAAGCATGCAAAAGAGCTCGAGAGCATGCGGATTGGCGAGGAATGGGATGACAGCTTACAATCGAAAGAACAGATTGAAGCCAAGTTACTGAGCAAGTATGAGGCTGCTATGAGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACGGGAAGAACACATCTAAATCTATGAATCCAATGTTCATGGATCCAACCAATCCTAGCTGGGGTTGGAGTTGGTTGGAACGATGGATGGCAGCTCGACCTTGGGAGAGCCGTGCCATGATGGATAAAGAGCCGAACGACCATTCATCCATAAAAAGCTCAAGCCGCAGCATTACTGCTGGGGAAATCAGCAAATCATTTGCTCGTTTCCAGTTAAATTCTGAAACGCATTCTCCAACGGCCAGCCAAAATCCTGGCACACCTAGCTTCCAGTCCCAATCAGCTCCTCCCAAGGTACCGGCTTCTCCGGGAATTGCTAGGAAACTGAAGAAGGGGAGCCCAAGGGACAGCTTGGTTTTGGATGATGACTCCAAAAGCATGGTCAGTGTACAGTCAGACCGGTTTCGGAGGCACTCCATTGCCGGATCATCAGTGAGGGATGATGAGAGCCTTGCCAGCTCTCCATCAGTTCCAAGTTACATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGAACACAAAGTCAAAGTCCATTAGCCATGGAAAATGGGAAAACTGATAAGGGGTCCTTCGGGACTGCAAAGAAGCGTCTTTCTTTCCCGGCTTCCCCTGCCAGACCACCCCGGCGGCATTCAGGTCCACCAAAGATAGAAAGCAGCTTAAATGCAGAAGTCGCCGTGAGCAACGGCGCGGCCAGTTGA 1341 0.4855 MGRKGNWFSSVKKALSPDSKEKKEQKSKKKWFGKQKLQSSGSYQESDKTPPLLPPEDVKLTDLEIESSHDRVVEVATAKDVEEPVPVVAVQAPVVRVEAATTSHTIARFAGKSKDEVAAIKIQTAFRGYLARRALRALRGLIRSRRIRMLEENQALQRQLLQKHAKELESMRIGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNGKNTSKSMNPMFMDPTNPSWGWSWLERWMAARPWESRAMMDKEPNDHSSIKSSSRSITAGEISKSFARFQLNSETHSPTASQNPGTPSFQSQSAPPKVPASPGIARKLKKGSPRDSLVLDDDSKSMVSVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKAKSRTQSQSPLAMENGKTDKGSFGTAKKRLSFPASPARPPRRHSGPPKIESSLNAEVAVSNGAAS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00011 446 SMART iq_5 114 136 IPR000048 GO:0005515
Stsc60429g00011 446 MobiDBLite consensus disorder prediction 287 311 - -
Stsc60429g00011 446 MobiDBLite consensus disorder prediction 359 396 - -
Stsc60429g00011 446 Gene3D - 94 141 - -
Stsc60429g00011 446 MobiDBLite consensus disorder prediction 322 345 - -
Stsc60429g00011 446 ProSiteProfiles IQ motif profile. 115 144 IPR000048 GO:0005515
Stsc60429g00011 446 MobiDBLite consensus disorder prediction 1 55 - -
Stsc60429g00011 446 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Stsc60429g00011 446 PANTHER IQ-DOMAIN 5-RELATED 1 143 - -
Stsc60429g00011 446 MobiDBLite consensus disorder prediction 287 446 - -
Stsc60429g00011 446 Pfam Protein of unknown function (DUF4005) 360 426 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00011 Stsc-Chr60429 75440 77900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00011 1 446 IQD Protein Family AT5G03040 49.087 3.32e-131 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00011 - - gmx:100800080 588.956