Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00008 ATGGGGAAGACACGTGGAATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGCAGAAGGCAGCGGTGGGCAGACAAGTCATACAAGAAGTCCCATCTCGGTAATGAATGGAAGAAACCTTTTGCTGGTTCTTCCCATGCCAAGGGCATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCAAGGGTTCAACTCATCAAGAACGGGAAGAAGATTGCTGCTTTCGTTCCAAATGATGGTTGCTTAAACTACATTGAAGAGAATGATGAAGTTTTGATCGCCGGATTCGGAAGAAAAGGACATGCTGTTGGTGATATTCCCGGTGTTAGGTTCAAGGTTGTGAAGGTCTCTGGTGTGTCACTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 429 0.4755 MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00008 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc60429g00008 142 NCBIfam 30S ribosomal protein S12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Stsc60429g00008 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Stsc60429g00008 142 Gene3D - 25 142 IPR012340 -
Stsc60429g00008 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Stsc60429g00008 142 MobiDBLite consensus disorder prediction 9 25 - -
Stsc60429g00008 142 FunFam 40S ribosomal protein S23 25 142 - -
Stsc60429g00008 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc60429g00008 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc60429g00008 142 MobiDBLite consensus disorder prediction 1 30 - -
Stsc60429g00008 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00008 Stsc-Chr60429 47557 49358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00008 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.775 2.17e-96 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00008 K02973 - fve:101294077 286.96