Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00006 ATGCACATAATAGGGGAAGAGTCGCAGACGCGGCAGATGTGCGAATATGGAAAATCCTCCACCGATCCATTTGGTTTGCTTCATATACTCGATGTTTATTTCCCTCAGCAACTGTTCACTGTCCAAGATTCTTGGCTCAACCTCACTTCTGCTCTTCTCACCTCCTTCTCTTCTTCCTCCGGCCAAAACCTGGCTTCTCAGGTGAAAAATGATTATGGAAACTTTGTCCTGTCAGTAGACTTTCAGCAACTCAAACAAGTATGTCATGTTGAGGAATTTTATGCAATGTTGGAGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCCGCAGTTCACAAGGTTTTGCTTTCCAATTTGGAGAATGACAAGCCGGAGCTTGATGCAAAAGTAGATATCCGTCTTCATAACTGTCCTGAAACTATGATTGCTTTGAAGAACTTAAAAGCAGCTTACATTGACAAGCTTGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCTCTTGTAGTAGAACTGACTTTCGAATGTAGCAAGTGTAAACAAAGTATTACGCGTGTATTTCCAGATGGCAAATATTCACCTCCTTCAATTTGTAATTTGTATGGCTGCAAGAGCAAAATCTTTATTCCATTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAGATATTAAAACCTGAAGACCATGAAGAAGGGAGAGTGCCTCGAACAGTGGAATGCGAGCTTACTCAAGATCTTGTAGATGTGTGCATACCTGGTGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAGCCAGGGATTTTACTACTTATATCTGGAAGCTGTATCTGTAAAAAATTCGAAGTCACAGTCCACTACTGGAGATTTGCAAGAACCTAATCCCAAAGCTAGACCATCTGAGCTGTTTGATCTGTTTTCATTTTCTTCGAGGGATTTAGAATTCGTAGTGAAGTTTGTGAAGGAGCATGGTTCAGATTTGTTTCGTCAAATCCTTCAATCTATATGCCCATCCATCTACGGCCATGAGCTAGTTAAAGCTGGAATAACTCTAGCATTATTCGGTGGTGTGCGAAAGCATTCTATGGATCCAAATAAGGTTCCTGTGAGGGGAGACATTCATATTATAATTGTTGGTGATCCTGGTCTTGGTAAAAGCCAATTGCTACAAGCAGCAGCAGCAGTTTCTCCACGTGGTATTTATGTTTGTGGGAATGCCACAACTAAAGCTGGCCTTACGGTAGCTGTAGTGAAGGATTCTATGACTAATGATTATGCATTTGAGGCTGGTGCCATGGTTCTGGCTGATAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCATCAGAACATCAGGCTTTACTAGAGGCAATGGAGCAACAATGTGTTTCCATTGCGAAGGCCGGTCTAGTAGCCAGTTTATCATCCCGAACTTCTGTCTTGGCGGCTGCAAACCCTGTTGGTGGTCATTATAACCGGGCAAAAACTGTTAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCACGTTTTGATTTGATTTTCATACTGCTTGACAAACCTGATGAGCTTCTAGACAAGCGACTCTCTGAGCACATTATGTCTCTTCATGCTGGGACTGGACAAAATTCACTGGCATTGAAAAAACGACGTGGAGATCCATCCCCTGACTCCAGAACTGTTGTATCGCAGAATGCTGAAAGTGGTGTAAATTTGGGTGTTAGATCTGGTTCCTTGGTTTCAAGGTTGAGACTTGACCCAGAGAGAGACAGAGATTTTGTTCCATTGCCCAGTCAACTTCTTCGTAAATACATTGCTTATGCAAGGAGTTTTGTATTTCCAAGGATGTCCAAGCCAGCAGCAGATATCTTACAAAAGTTTTACCTTAAACTTCGAGATCATAATACATCGGCTGATGGCACTCCTATAACAGCAAGGCAACTGGAAAGTCTAGTAAGGTTGGCTGAAGCTCGAGCTCGACTGGACTTGAGAGAAGAAATAACAGCCCAAGATGCACTGGATGTTGTGGAAATTATGAAGGAATCTCTATATGATAAATACGTTGATGAGCATGGTATTGTAGATTTCGGTCGAAGTGGGGGGATGAGTCAACAAAAGGAGGCAAAACGCTTTCTAAATGCCCTCAATAAGCAATCTGAACTAGAACAGAAAGATTGTTTTTCAGTATCGGAAATATATAGCCTCGCAGATAGGATTTCCTTGAAAGTTCCAGATATTGACACTTTCATCGAAAATTTAAACAGTGTTGGTTATCTGCTCAAGAAAGGACCAAAGACATACCAGGTGCTATCCTCTTCATACAGTCGAAGCCAATCATTTAGGTCTAGGGGCTAA 2430 0.4148 MHIIGEESQTRQMCEYGKSSTDPFGLLHILDVYFPQQLFTVQDSWLNLTSALLTSFSSSSGQNLASQVKNDYGNFVLSVDFQQLKQVCHVEEFYAMLEEKPKIALLCMSAAVHKVLLSNLENDKPELDAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVELTFECSKCKQSITRVFPDGKYSPPSICNLYGCKSKIFIPLRSTAQTIDFQKIRVQEILKPEDHEEGRVPRTVECELTQDLVDVCIPGDVVTVTGIIRGINTYMDIGGGKSKNRSQGFYYLYLEAVSVKNSKSQSTTGDLQEPNPKARPSELFDLFSFSSRDLEFVVKFVKEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDPNKVPVRGDIHIIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSMTNDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSEHIMSLHAGTGQNSLALKKRRGDPSPDSRTVVSQNAESGVNLGVRSGSLVSRLRLDPERDRDFVPLPSQLLRKYIAYARSFVFPRMSKPAADILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLREEITAQDALDVVEIMKESLYDKYVDEHGIVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRISLKVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYSRSQSFRSRG 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00006 809 CDD MCM8_WHD 730 795 - -
Stsc60429g00006 809 Pfam MCM P-loop domain 349 562 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 Gene3D - 172 222 - -
Stsc60429g00006 809 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 70 746 IPR031327 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 MobiDBLite consensus disorder prediction 569 589 - -
Stsc60429g00006 809 Coils Coil 466 486 - -
Stsc60429g00006 809 CDD MCM8 355 707 - -
Stsc60429g00006 809 Gene3D - 145 274 IPR012340 -
Stsc60429g00006 809 SUPERFAMILY Nucleic acid-binding proteins 72 275 IPR012340 -
Stsc60429g00006 809 SMART mcm 141 709 IPR031327 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 ProSiteProfiles MCM family domain profile. 351 558 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 FunFam DNA helicase MCM8 isoform X1 172 223 - -
Stsc60429g00006 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 505 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 454 468 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 494 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 532 540 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 PRINTS Mini-chromosome maintenance (MCM) protein family signature 394 409 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc60429g00006 809 Pfam MCM AAA-lid domain 625 708 IPR041562 -
Stsc60429g00006 809 Pfam MCM OB domain 145 273 IPR033762 -
Stsc60429g00006 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 714 IPR027417 -
Stsc60429g00006 809 SMART AAA_5 395 547 IPR003593 GO:0016887
Stsc60429g00006 809 Gene3D - 329 717 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00006 Stsc-Chr60429 33004 39179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00006 19 795 Core DNA Replication Machinery Family AT3G09660 71.759 0.0 1153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00006 K10737 - gmx:100784549 1318.14