Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60429g00004 ATGCAGACAGCTGTAGTGGGTACGAATGGGTCTCTAACTTACCGGTTGAACTTGGATGGTTTTCCTGGTGCTGGTTGGGCCTTCTCCTATTGTGCAGAGATTGAAGATTTAGGTCCAAATGATTCCAGAAAATTTAGGCTAGTACTTCCAGGCCAGCCTGATATTAGCAAGGCTGTTGTAAATATTGAAGAAAATGCTCAGGGAAAATATCGCCTCTATGAACCAGGATTTAACAACATATCCCTGCCTTTTGTGCTTTCTTTTAGATTTGGCAAGACCTCTGATTCTTCCAAGGGTCCTCTCCTAAATGCAATGGAGATAAATAAATATTTGGAGAAAAATGATGGCTCTATTGATTTAGCAGCTGTTTCTAGTGTACTGTCACACTACCCTTCGGCAGATTGGGCACAAGAGGGAGGGGACCCATGTCTACCTGTTCCATGGTCATGGATCCGATGTAATTCAGATCCACAACCAAAAGTTGTTTCAGTCTTATTATCCGGTAAAAATTTGACTGGAAATATTCCTGTGGATCTCACCAAATTGACTGGTCTGGTTGAACTATGGCTTGATGGAAACATGTTGACTGGCCCCATACCAGATTTTACTGGATGCATGGACTTAAAGATCATTCATCTTGAGAACAATCAATTGACGGGTGCGCTCCCAACATCTCTTCTGAACCTTCCAAATTTAAGAGAACTGTATGTGCAAAATAATTTGTTATCTGGAACAATACCATCAGATCTTCTGAGCAAAGATTTGGTTTTGGACTACACTGGAAACATTAATCTTCACAGAGGAAGAAGAATTGACGGAAAAACGTATGTTATTATAGGTTCCACAGTGGGGGCTTCTGTTTTACTATTGGCTACCATTATATCTTACTTGTTTATGCGTAAAGGAAACAGAAGGTATTTTGAGCAAGACCACATGGCTTCTCTCCCTACTCAAAAGCTGGCCTCCTGGAAAAATGATGATCCTGCAGAAACTGCTCACTACTTCAGTTTTTCTGAAATTTTAAATGCCACAAATAATTTTGAGAAAAAAATTGGTTCTGGGGGTTTTGGAGTTGTGTACTATGGGAAACTGAAAGACGGAAAAGAGATAGCTGTGAAAGTTTTGACCAATAATTCCTATCAAGGCAAGCGAGAGTTCTCCAATGAGGTGACGCTTCTCTCAAGAATACATCACAGAAATTTGGTACAGCTTCTTGGGTATTGCCGGGAGGAAGATAGTAGCATGCTAGTTTATGAATTCATGCATAATGGAACTCTCAAGGAGCATCTCTATGGCCCATTATCGCGCGGACGGAGTATCAATTGGATTAAGCGGCTTGAGGTTGCAGAAGATGCTGCAAAAGGGATTGAATACCTTCATACGGGTTGTGTTCCTGTGGTTATCCATAGAGATGTCAAAAGCAGCAATATCCTTCTTGACAAGCATATGAGAGCTAAGGTCTCAGATTTTGGTCTTTCAAAACTTGCTGTTGATGGACATTATCTAGTTGCGACTAAGGTCCCAATAAGCTCAGGATTGTCATGCAAACTTTTCTTGGATAGGTACTATATCTCCCAGCAGCTGACTGACAAGAGCGATGTTTATAGTTTTGGAGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCAAATGAAAGCTTTGGTGTTAATTGCCGAAACATAGTCCAGTGGGCAAAATTGCACATTGAGAGTGGAGACATACAAGGAATTATTGACCCCATGCTAAGGAATAATTACGACCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAACCTCATGGACATATGAGGCCATCAATTTCTGAAGTTCTGAAGGAGATCCAAGATGCAATAGCTATTGAGAGAGAGGCTGAAAGCAACTCACGTGACTTGTCAAGAAATTCTTTCCCCTCTTCCATGAACATGGGTTCAATGGATCTAGGTGCCACTGAGAGTTACCTCTCAATTGATGAATCCATTGAACGCCCAACCGCAAGATAA 2022 0.409 MQTAVVGTNGSLTYRLNLDGFPGAGWAFSYCAEIEDLGPNDSRKFRLVLPGQPDISKAVVNIEENAQGKYRLYEPGFNNISLPFVLSFRFGKTSDSSKGPLLNAMEINKYLEKNDGSIDLAAVSSVLSHYPSADWAQEGGDPCLPVPWSWIRCNSDPQPKVVSVLLSGKNLTGNIPVDLTKLTGLVELWLDGNMLTGPIPDFTGCMDLKIIHLENNQLTGALPTSLLNLPNLRELYVQNNLLSGTIPSDLLSKDLVLDYTGNINLHRGRRIDGKTYVIIGSTVGASVLLLATIISYLFMRKGNRRYFEQDHMASLPTQKLASWKNDDPAETAHYFSFSEILNATNNFEKKIGSGGFGVVYYGKLKDGKEIAVKVLTNNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCREEDSSMLVYEFMHNGTLKEHLYGPLSRGRSINWIKRLEVAEDAAKGIEYLHTGCVPVVIHRDVKSSNILLDKHMRAKVSDFGLSKLAVDGHYLVATKVPISSGLSCKLFLDRYYISQQLTDKSDVYSFGVILLELISGQEAISNESFGVNCRNIVQWAKLHIESGDIQGIIDPMLRNNYDLQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAIAIEREAESNSRDLSRNSFPSSMNMGSMDLGATESYLSIDESIERPTAR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60429g00004 673 SUPERFAMILY Protein kinase-like (PK-like) 330 619 IPR011009 -
Stsc60429g00004 673 MobiDBLite consensus disorder prediction 632 651 - -
Stsc60429g00004 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Stsc60429g00004 673 Gene3D Phosphorylase Kinase; domain 1 328 420 - -
Stsc60429g00004 673 SUPERFAMILY L domain-like 146 252 - -
Stsc60429g00004 673 FunFam Leucine-rich repeat protein kinase family protein 120 271 - -
Stsc60429g00004 673 PANTHER OS07G0107800 PROTEIN-RELATED 208 625 - -
Stsc60429g00004 673 SMART serkin_6 345 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60429g00004 673 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Stsc60429g00004 673 Pfam Malectin-like domain 1 108 IPR024788 -
Stsc60429g00004 673 Gene3D Ribonuclease Inhibitor 119 267 IPR032675 -
Stsc60429g00004 673 ProSiteProfiles Protein kinase domain profile. 345 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60429g00004 673 Pfam Protein tyrosine and serine/threonine kinase 347 618 IPR001245 GO:0004672|GO:0006468
Stsc60429g00004 673 FunFam Leucine-rich repeat receptor-like protein kinase 323 420 - -
Stsc60429g00004 673 Gene3D Transferase(Phosphotransferase) domain 1 421 646 - -
Stsc60429g00004 673 MobiDBLite consensus disorder prediction 637 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60429g00004 Stsc-Chr60429 21398 27470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60429g00004 1 455 Receptor kinase-like Gene Family AT2G37050 66.304 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc60429g00004 PK_Tyr_Ser-Thr 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60429g00004 - - gmx:100808740 1159.82