Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60428g00040 ATGGCGTCTTCATTCTCAACTCAAATTCTACTTCCCCGTTTTCATCATCTCCAGGGGAAATTTAACCAAGATGTGTCCATGGTTCAGAAGCCGCAGATTGTCGGTAGCAGTATGGGATCACAGATTGGTTATCATAGAGCACTGGCTTCAAGAGCACACTATGCTGTGAGGCTTTCTGTCACACAACAATCTGAAGCAAAATCGATGAGATATAGAAGAATGACATGCATGAACGCCACTAAAACTGAGCTGCTAGCCAAAGTGACAACTAAGTGCTTCTTCGATGTAGAAATTGCGGGTGAACCTGCTGGCAGGATTGTTTTTGGTTTATTTGGGGATGTTGTTCCTAAAACAGCCGAGAATTTTCGAGCTTTGTGCACAGGAGAGAAAGGATATGGCTATAAAGGATGCTACTTCCATCGCATAATCAAAGACTTCATGGTTCAAGGCGGGGACTTCACCGAGGGAGATGGAACCGGTGGAATTAGTATCTATGGTGCTCGATTTGAAGATGAGAATTTTTCCTTGAAGCATGCTGGTCCTGGAGTTTTGAGTATGGCGAATGCCGGTCCTAATACCAATGGCAGTCAATTTTTTATTTGCACTATACCGACTCCATGGCTAGATAATCGCCATGTCGTGTTTGGACAAGTCATTGATGGAATGGATATTGTGAAGACTCTCGAGTCAGTGGAGACAAGCCAGCGCGATAACAGGCCCCGGAAAGCATGCAAAATTGCTAATTCCGGCGAACTGCCTCTCGACGGTTGA 771 0.4501 MASSFSTQILLPRFHHLQGKFNQDVSMVQKPQIVGSSMGSQIGYHRALASRAHYAVRLSVTQQSEAKSMRYRRMTCMNATKTELLAKVTTKCFFDVEIAGEPAGRIVFGLFGDVVPKTAENFRALCTGEKGYGYKGCYFHRIIKDFMVQGGDFTEGDGTGGISIYGARFEDENFSLKHAGPGVLSMANAGPNTNGSQFFICTIPTPWLDNRHVVFGQVIDGMDIVKTLESVETSQRDNRPRKACKIANSGELPLDG 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60428g00040 256 Gene3D - 76 255 IPR029000 -
Stsc60428g00040 256 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 94 249 IPR002130 GO:0000413|GO:0003755
Stsc60428g00040 256 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 93 251 IPR002130 GO:0000413|GO:0003755
Stsc60428g00040 256 SUPERFAMILY Cyclophilin-like 83 252 IPR029000 -
Stsc60428g00040 256 CDD cyclophilin_ABH_like 91 250 - -
Stsc60428g00040 256 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 91 252 - -
Stsc60428g00040 256 FunFam Peptidyl-prolyl cis-trans isomerase 78 256 - -
Stsc60428g00040 256 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 134 151 IPR020892 GO:0003755|GO:0006457
Stsc60428g00040 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 197 209 IPR002130 GO:0000413|GO:0003755
Stsc60428g00040 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 210 225 IPR002130 GO:0000413|GO:0003755
Stsc60428g00040 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Stsc60428g00040 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Stsc60428g00040 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 197 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60428g00040 Stsc-Chr60428 250637 252829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60428g00040 104 246 U-box Gene Family AT5G67530 47.222 4.38e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60428g00040 K03768 - gmx:100526955 382.874