Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60428g00034 ATGTTAGTTTTGAGGATATTAACCACACATCTTAGAGTAGTATCCGCATCATCATCATCATGGCAACAAGCTCATGCAACATTCTATGGTGGAAGTGATGCCTCAGATACAATGGGTGGAGCATGTGGGTATGGAAATCTATACACAGATGGTTATGGAGTTAAAACAGCTGCATTGAGCACTGCTTTGTTCAACGATGGCAAAGCATGTGGTGGTTGCTATCAGATAGTTTGTGATGCAATAAAAGTGCCCCAATGGTGCCTAAAGAACACTTCCATCACAATCACTGCCACAAATTTCTGTCCTCCAAACTATGACCTCCCCAGTGACGATGGCGGTTGGTGCAATCCTCCAAGGCCTCACTTTGACATGTCTCAACCTGCCTTTGAGACGATCGCCAAGTACAAGGCCGGAATTGTTCCTATTTTCTACAGAAAAGTTAGGTGCATAAAAAATGGAGGAATTAGATTCACCATCAATGGAAAAGACTATTTTGAGCTGGTGCTGATAAGCAACGTGGGTGGGGCAGGGGATATCTCCAAAGTTTGGATCAAAGGGTCCAACATGACCAACTGGGAAGCCATGTCAAGGAATTGGGGCTCTAACTGGCAAAGCTTGAGCTACCTCAATGGCCAGAGCTTGTCATTCAAAATCCAGCTCAGTGATGGAAAGACTCGCACCGCGTCCGATGTGGCACCATCCAATTGGAAATTTGGCCAGTCCTTCACCAGCAATATTCAGTTCTGA 747 0.4525 MLVLRILTTHLRVVSASSSSWQQAHATFYGGSDASDTMGGACGYGNLYTDGYGVKTAALSTALFNDGKACGGCYQIVCDAIKVPQWCLKNTSITITATNFCPPNYDLPSDDGGWCNPPRPHFDMSQPAFETIAKYKAGIVPIFYRKVRCIKNGGIRFTINGKDYFELVLISNVGGAGDISKVWIKGSNMTNWEAMSRNWGSNWQSLSYLNGQSLSFKIQLSDGKTRTASDVAPSNWKFGQSFTSNIQF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60428g00034 248 FunFam Expansin 11 150 - -
Stsc60428g00034 248 SUPERFAMILY Barwin-like endoglucanases 13 172 IPR036908 -
Stsc60428g00034 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 244 IPR007117 -
Stsc60428g00034 248 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin signature 51 65 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Stsc60428g00034 248 Pfam Expansin C-terminal domain 155 233 IPR007117 -
Stsc60428g00034 248 Gene3D - 6 149 IPR036908 -
Stsc60428g00034 248 PANTHER EXPANSIN-A15 6 245 IPR002963 GO:0009664
Stsc60428g00034 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Stsc60428g00034 248 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Stsc60428g00034 248 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576
Stsc60428g00034 248 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Stsc60428g00034 248 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Stsc60428g00034 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Stsc60428g00034 248 SUPERFAMILY PHL pollen allergen 151 244 IPR036749 -
Stsc60428g00034 248 CDD DPBB_EXPA_N 21 149 - -
Stsc60428g00034 248 Gene3D - 151 248 IPR036749 -
Stsc60428g00034 248 FunFam Expansin 154 248 - -
Stsc60428g00034 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 154 IPR007112 -
Stsc60428g00034 248 Pfam Lytic transglycolase 56 144 IPR009009 -
Stsc60428g00034 248 SMART dpbb_1 56 144 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60428g00034 Stsc-Chr60428 226758 228333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60428g00034 1 248 Expansin Gene Family AT4G01630 73.896 1.05e-140 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60428g00034 - - vvi:100248670 435.647