Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60428g00028 ATGGCTTCCCTTATTGGCGTTTCTTCTATACACCAAACCCACGCTCTCGAACTATACAAGAGAACCACAACGCCAGCGACGACGACGGCAACAGCTTCGGGTTCTACCAACGCCGTTTCGCTCCCTTCGTTGTCGTTTGACAACAAGTCGCACTTCAACGCCGTTCTCAGAGCTCACTATCACCTTAACGACGGAAATAATAGGCGCAGGCTCGGTTCTAATGCTGTTGTGACAGCTAATGACTCTTCCGTGCTCAGCGAAGAAGCCTTCAAGGGTTTTGGTTTTGACGGTGTTGGCGATGATGATGAGGTTGGTTATGTGTACGAGAGTGACGGTGACGGTAACGCTGAATTTCTTGCTTCAAGCGAAGATGAACTCGATGTTTCGAAGCTTGGTTTGCCTTCGAAGCTCGTCGACTCGCTCCAGAAGCGTGGAATCACTAGCCTTTTCCCAATTCAGAGAGCTGTGCTAGTGCCTGCACTAGAAGGTAGAGATATCATTGCCCGANNNNNNNNNNCAAAGACCGGGACAGGGAAGACATTGGCGTTTGGGATTCCCATTATTAAAGGCATCACCGATGATGAGCAAGGTTCTTACAGGCGTTCTGGTCGTCTTCCTAAAGTATTGGTCCTTGCACCTACTAGGGAGTTAGCGAAGCAAGTCGAGAAGGAGATAAAAGAATCTGCGCCTTACCTGAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAAAGTGCTCTTTCGCGTGGTGTTGATGTAGTGGTCGGAACACCTGGAAGAATAATTGACCTAATAAATGGGAACAGCCTTAAATTGAGTGAAGTTCAATATTTGGTTCTTGATGAAGCCGATCGAATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTGGAAAAGGTCCCATCTGAGCGGCAAATAATGCTTTTCTCTGCGACCATGCCGGGTTGGGTGAAGAAATTGTCAAGAAAATATCTGAACAATCCGTTGACAATTGATTTGGTCGGTGACGAAGAAGAAAAGCTTGCTAATGGGATCAAACTTTATGCTATGTCAGCCACTGGCACTTCAAAGCGGACAATTCTTTCTGATCTTGTAACTGTCTATGCAAAGGGTGGAAAGACTATTGTTTTCACCCAGACAAAAAAAGATGCCGATGAAGTATCACTGTCATTAACAAGTAGCATAGCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAAAGAACATTGAATGGCTTTCGGCAAGGGAAGTTCACCGTACTTGTTGCCACAGATGTTGCAGCCCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTACGAACTTCCTAATGATCCTGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAAGAAGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACCGTTAGATCCCTCGAGCGTGATGTAGGCTGCAAATTTGAATTTGTTAATCCACCAGCTATTGGAGAGATTTTGGAAGCATCTGCTGCACAAGTTGTTGCTACACTTGAGAGAGTTCATCCCGAGTCTATTGAGTTCTTCACTGCAACTGCACAAAAATTAGTTGAAGAGCAAGGGGTTAGTGCCCTTGCAGCTGCACTAGCACAGCTGAGTGGATTTGGTAGACCTCCATCATCCCGATCATTAATCAACCATGAGCAGGGATGGGTTACATTGCAACTTACTCGGGATGGAGATAATTCTAGAAGATTTCTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCTGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGATGACCGGATTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAATTACTCAACAAGGATTTGCCTCCTGGAAACACTATTTCCAAGATCACCAAGTTACCTGCTTTGCAAGATGATGGACCTGCAAGTGATTACTATGGGAAGTTTTCCGACAGAGAACGAAGTAACCGAAGAGGTTCAAGAGATCAGAGAGGTTTTAAAACCTCACGAGGATATGGAGGAAACCGAGGCTCTGATGATGATTTTGGTAGTTCATACGGGAGAGGGAGTAAAAGTTTTAAATCGGGCAACAACCGGTCTCGAATGGGAAAAAGCAGTGATGACTGGCTGATTGGAGGTAGACAATCAAGCAGGGGTGGTAGCTATGGAGGGGCCTGCTTTAACTGCGGAGAATCTGGGCATCGCGCATCAGATTGTCCCCAAAAGCGAAGCTTCTTTTAG 2301 0.4524 MASLIGVSSIHQTHALELYKRTTTPATTTATASGSTNAVSLPSLSFDNKSHFNAVLRAHYHLNDGNNRRRLGSNAVVTANDSSVLSEEAFKGFGFDGVGDDDEVGYVYESDGDGNAEFLASSEDELDVSKLGLPSKLVDSLQKRGITSLFPIQRAVLVPALEGRDIIARXXXXKTGTGKTLAFGIPIIKGITDDEQGSYRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADRMLAVGFEEDVEVILEKVPSERQIMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEEKLANGIKLYAMSATGTSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLSLTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVNPPAIGEILEASAAQVVATLERVHPESIEFFTATAQKLVEEQGVSALAAALAQLSGFGRPPSSRSLINHEQGWVTLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHIIADDRIQGAVFDLPEDIAKELLNKDLPPGNTISKITKLPALQDDGPASDYYGKFSDRERSNRRGSRDQRGFKTSRGYGGNRGSDDDFGSSYGRGSKSFKSGNNRSRMGKSSDDWLIGGRQSSRGGSYGGACFNCGESGHRASDCPQKRSFF 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60428g00028 766 Gene3D - 127 340 IPR027417 -
Stsc60428g00028 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 525 IPR001650 -
Stsc60428g00028 766 Pfam GUCT (NUC152) domain 557 657 IPR012562 GO:0003723|GO:0004386|GO:0005524
Stsc60428g00028 766 SMART ultradead3 145 353 IPR014001 -
Stsc60428g00028 766 Pfam Zinc knuckle 745 761 IPR001878 GO:0003676|GO:0008270
Stsc60428g00028 766 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 282 290 IPR000629 -
Stsc60428g00028 766 SMART helicmild6 390 470 IPR001650 -
Stsc60428g00028 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 491 IPR027417 -
Stsc60428g00028 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 336 IPR014001 -
Stsc60428g00028 766 CDD GUCT_Hera 564 644 - -
Stsc60428g00028 766 FunFam Nucleolar RNA helicase II 358 548 - -
Stsc60428g00028 766 ProSiteProfiles Zinc finger CCHC-type profile. 746 761 IPR001878 GO:0003676|GO:0008270
Stsc60428g00028 766 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 120 680 - -
Stsc60428g00028 766 MobiDBLite consensus disorder prediction 665 685 - -
Stsc60428g00028 766 SUPERFAMILY Retrovirus zinc finger-like domains 733 764 IPR036875 GO:0003676|GO:0008270
Stsc60428g00028 766 CDD DEADc 137 337 - -
Stsc60428g00028 766 SMART c2hcfinal6 745 761 IPR001878 GO:0003676|GO:0008270
Stsc60428g00028 766 Gene3D - 733 764 - -
Stsc60428g00028 766 CDD SF2_C_DEAD 350 479 - -
Stsc60428g00028 766 MobiDBLite consensus disorder prediction 661 766 - -
Stsc60428g00028 766 Gene3D - 358 554 IPR027417 -
Stsc60428g00028 766 MobiDBLite consensus disorder prediction 708 724 - -
Stsc60428g00028 766 Pfam DEAD/DEAH box helicase 150 325 IPR011545 GO:0003676|GO:0005524
Stsc60428g00028 766 Pfam Helicase conserved C-terminal domain 363 470 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60428g00028 Stsc-Chr60428 193324 199089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60428g00028 152 492 Eukaryotic Initiation Factors Gene Family AT1G72730 37.101 2.22e-60 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60428g00028 - - pcin:129296705 1080.86