LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60428g00022	ATGTCATCCTCGAGGCCTAGCCAATCTTCTAGCAATTCAGGGAGATCAAGACATAGTGCTAGGATTATTGCTCAGACCACTGTAGATGCAAAGATCCATGCTAGTTTCGAGGAGTCTGGTAGTTCCTTTGACTACTCTAGTTCGGTGCGTGCCTCTGGCTCAGCTGATGGAGAAAATCAACCAAGAACAGATAAAGTAACAGCGACTTACCTCCATCATATACAGAAAGGCAAGCTGATCCAACCCTTTGGGTGCTTGCTGGCCTTGGATGAGCAAACATGCAAGGTCATTGCATACAGTGAGAATGCGCCGGAAATGCTGACCATGGTGAGTCATGCTGTTCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACCGACATAAGAACTATATTCACTGCTCCAAGTGCTTCGGCATTGCAGAAAGCGCTAGGATTTGGAGAAGTTCATCTTCTTAACCCTATCCTAGTTCATTGCAAGACTTCTGGGAAACCTTTCTATGCTATTCTCCATCGTGTTACCGGTAGTTTGATTATTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCTATGACTGCAGCAGGTGCTCTGCAATCCTACAAGCTTGCTGCCAAAGCAATCACTCGATTGCAGTCTTTGCCTAGTGGGAGCATGGAAAGGCTATGTGATGCAATGGTTCAAGAAGTTTTTGAACTCACGGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCACGGGGAAGTGATTGCTGAGATAACAAAGCCAGGCCTTGAACCATATCTTGGTTTGCACTATCCAGCCACGGATATTCCCCAGGCTGCTCGTTTCTTGTTCTTGAAGAACAAGGTCCGCATGATTGTTGATTGTCATGCAAAACATGTAAAGGTTATTCAAGATGAGAAGCTGCCCTTTGATTTGACTTTGTGTGGTTCAACCTTAAGAGCTCCTCATAGTTGCCATTTGCAATACATGTCAAACATGGATTCAATTGCTTCCCTAGTTATGGCAGTTATAGTCAATGACAGTGATGAAGATGGAGACAACTCTGATGCTGTTCAGCCACAAAAGAGAAAGCGACTATGGGGCCTAGTTGTTTGTCATAACACTACTCCCAGGTTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAATTTCTGTCACAAGTATTTGCCATTCATGTCAACAAAGAAATAGAGTTAGAATATCAGATTACTGAAAAGAATATCCTTCGCACTCAGACGCTCTTGTGTGATATGCTGATGCGAGATGCACCCTTAGGAATTGTATCACAAAGCCCTAATATAATGGACCTAGTTAAATGTGATGGGGCTTCCCTCTTGTATAAAGACAAGGTATGGAGATTAGGAATAACACCTACTGAATCTCATATAAGAGAGATAGCTTCATGGTTGACTGAGAACCATATGGATTCCACGGGTCTTAGTACAGATAGCTTGTTAGATGCCGGGTTCCCAGGGGCGTTTTCTCTTGGTGATGTAGTATGTGGAATGGCAGCAGTTAGAATAACCGAGAAAGACATAGTTTTCTGGTTTCGGTCACACACGGCTGCAGAAATCAGATGGGGTGGTGCAAAGCATGATCCCAGTGAAAAGGATGATGGCAGGAGAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTTGTTAAGTCAAGGAGCTTACCGTGGAAAGACTATGAGATGGATGCTATTCATTCATTGCAACTAATACTAAGAAATGCATTCAAAGAGACGGACAGGATGGACATAACCACAAATGCAATCAATACAAAGCTGAGTGATTTGAGGATTGAAGGGATGCAAGAACTCGAAGCTGTGACAAGTGAGATGGTTAGATTAATTGAAACTGCAACAGTGCCTATTCTCGCTGTGGATGTTGATGGGCTGGTTAATGGATGGAATATAAAGATTGCCGAGTTGACTGGCCTTTCAGTTGGTGATGCTATAGGAAAACATCTTCTAACACTCGTTGAGAACTCTTCAGTCGGTATAGTCAAGAAGATGCTTGAGATGGCACTCCACGGTGAAGAAGAGAAAAATGTCCAATTTGAGATCAAAACACATGGGTCTAAGGCCGATAGTGGTCCTATTCGATTGGTAGTTAATGCTTGTGCAAGCCGGGATCTTCATGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGACATCACAGCTCAGAAGACTGTCATGGACAAATTTACCCGAATTGAAGGTGATTACAAGGCGATTGTACAGAATCGGAACCCATTGATCCCCCCAATATTTGGAACTGATGTGTTTGGTTGGTGTTGTGAGTGGAATGCGGCCATGACAAAGGTGACAGGATGGAAGAGAGAAGAGGTAATGGATAAGATGCTTTTAGGGGAGGTTTTTGGGACCCAGATGGCTTGTTGTCGTCTTAAGAACCAAGAAGCTTTCGTTAATTTTGGTATTGTACTTAATAAAGCCATGACCGGTTTGGAGACAGAGAAGGTTGCCTTTGGTTTCTTTGCTAGGAGTGGGAAGTATGTAGAATGCCTGCTTTCGGTGAGTAAAAAATTGGATGTCGATGGTGTGGTTACCGGGGTTTTCTGCTTCTTGCAGCTAGCTAGTCCAGAGTTGCAGAAAGCATTGCATGTTCAGCGGNNNNNNNNNNAGACTGAAAGCTTTAACTTATATGAAGAGGCAGATCAGGAATCCTTTATCTGGGATAATGTTTTCGCGGAAAATGTTGGAGGGCACTGA	2757	0.4356	MSSSRPSQSSSNSGRSRHSARIIAQTTVDAKIHASFEESGSSFDYSSSVRASGSADGENQPRTDKVTATYLHHIQKGKLIQPFGCLLALDEQTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVHLLNPILVHCKTSGKPFYAILHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDAMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFLKNKVRMIVDCHAKHVKVIQDEKLPFDLTLCGSTLRAPHSCHLQYMSNMDSIASLVMAVIVNDSDEDGDNSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLSQVFAIHVNKEIELEYQITEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGASLLYKDKVWRLGITPTESHIREIASWLTENHMDSTGLSTDSLLDAGFPGAFSLGDVVCGMAAVRITEKDIVFWFRSHTAAEIRWGGAKHDPSEKDDGRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKETDRMDITTNAINTKLSDLRIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLSVGDAIGKHLLTLVENSSVGIVKKMLEMALHGEEEKNVQFEIKTHGSKADSGPIRLVVNACASRDLHDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDVFGWCCEWNAAMTKVTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGLETEKVAFGFFARSGKYVECLLSVSKKLDVDGVVTGVFCFLQLASPELQKALHVQRXXXXTESFNLYEEADQESFIWDNVFAENVGGH	918

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60428g00022	918	FunFam	Phytochrome	613	744	-	-
	Stsc60428g00022	918	NCBIfam	PAS domain S-box protein	624	740	IPR000014	-
	Stsc60428g00022	918	ProSiteProfiles	PAC domain profile.	690	746	IPR000700	-
	Stsc60428g00022	918	CDD	PAS	761	872	IPR000014	-
	Stsc60428g00022	918	Gene3D	PAS domain	611	748	-	-
	Stsc60428g00022	918	Gene3D	PAS domain	74	321	-	-
	Stsc60428g00022	918	PRINTS	Phytochrome signature	233	252	IPR001294	GO:0006355\|GO:0009584
	Stsc60428g00022	918	PRINTS	Phytochrome signature	318	339	IPR001294	GO:0006355\|GO:0009584
	Stsc60428g00022	918	PRINTS	Phytochrome signature	712	729	IPR001294	GO:0006355\|GO:0009584
	Stsc60428g00022	918	PRINTS	Phytochrome signature	516	535	IPR001294	GO:0006355\|GO:0009584

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60428g00022	Stsc-Chr60428	145842	150951	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60428g00022	1	891	Histidine Kinase Gene Family	AT1G09570	83.072	0.0	1557

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60428g00022	K12120		-	gmx:100790763	1572.37

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