Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60428g00022 ATGTCATCCTCGAGGCCTAGCCAATCTTCTAGCAATTCAGGGAGATCAAGACATAGTGCTAGGATTATTGCTCAGACCACTGTAGATGCAAAGATCCATGCTAGTTTCGAGGAGTCTGGTAGTTCCTTTGACTACTCTAGTTCGGTGCGTGCCTCTGGCTCAGCTGATGGAGAAAATCAACCAAGAACAGATAAAGTAACAGCGACTTACCTCCATCATATACAGAAAGGCAAGCTGATCCAACCCTTTGGGTGCTTGCTGGCCTTGGATGAGCAAACATGCAAGGTCATTGCATACAGTGAGAATGCGCCGGAAATGCTGACCATGGTGAGTCATGCTGTTCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACCGACATAAGAACTATATTCACTGCTCCAAGTGCTTCGGCATTGCAGAAAGCGCTAGGATTTGGAGAAGTTCATCTTCTTAACCCTATCCTAGTTCATTGCAAGACTTCTGGGAAACCTTTCTATGCTATTCTCCATCGTGTTACCGGTAGTTTGATTATTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCTATGACTGCAGCAGGTGCTCTGCAATCCTACAAGCTTGCTGCCAAAGCAATCACTCGATTGCAGTCTTTGCCTAGTGGGAGCATGGAAAGGCTATGTGATGCAATGGTTCAAGAAGTTTTTGAACTCACGGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCACGGGGAAGTGATTGCTGAGATAACAAAGCCAGGCCTTGAACCATATCTTGGTTTGCACTATCCAGCCACGGATATTCCCCAGGCTGCTCGTTTCTTGTTCTTGAAGAACAAGGTCCGCATGATTGTTGATTGTCATGCAAAACATGTAAAGGTTATTCAAGATGAGAAGCTGCCCTTTGATTTGACTTTGTGTGGTTCAACCTTAAGAGCTCCTCATAGTTGCCATTTGCAATACATGTCAAACATGGATTCAATTGCTTCCCTAGTTATGGCAGTTATAGTCAATGACAGTGATGAAGATGGAGACAACTCTGATGCTGTTCAGCCACAAAAGAGAAAGCGACTATGGGGCCTAGTTGTTTGTCATAACACTACTCCCAGGTTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAATTTCTGTCACAAGTATTTGCCATTCATGTCAACAAAGAAATAGAGTTAGAATATCAGATTACTGAAAAGAATATCCTTCGCACTCAGACGCTCTTGTGTGATATGCTGATGCGAGATGCACCCTTAGGAATTGTATCACAAAGCCCTAATATAATGGACCTAGTTAAATGTGATGGGGCTTCCCTCTTGTATAAAGACAAGGTATGGAGATTAGGAATAACACCTACTGAATCTCATATAAGAGAGATAGCTTCATGGTTGACTGAGAACCATATGGATTCCACGGGTCTTAGTACAGATAGCTTGTTAGATGCCGGGTTCCCAGGGGCGTTTTCTCTTGGTGATGTAGTATGTGGAATGGCAGCAGTTAGAATAACCGAGAAAGACATAGTTTTCTGGTTTCGGTCACACACGGCTGCAGAAATCAGATGGGGTGGTGCAAAGCATGATCCCAGTGAAAAGGATGATGGCAGGAGAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTTGTTAAGTCAAGGAGCTTACCGTGGAAAGACTATGAGATGGATGCTATTCATTCATTGCAACTAATACTAAGAAATGCATTCAAAGAGACGGACAGGATGGACATAACCACAAATGCAATCAATACAAAGCTGAGTGATTTGAGGATTGAAGGGATGCAAGAACTCGAAGCTGTGACAAGTGAGATGGTTAGATTAATTGAAACTGCAACAGTGCCTATTCTCGCTGTGGATGTTGATGGGCTGGTTAATGGATGGAATATAAAGATTGCCGAGTTGACTGGCCTTTCAGTTGGTGATGCTATAGGAAAACATCTTCTAACACTCGTTGAGAACTCTTCAGTCGGTATAGTCAAGAAGATGCTTGAGATGGCACTCCACGGTGAAGAAGAGAAAAATGTCCAATTTGAGATCAAAACACATGGGTCTAAGGCCGATAGTGGTCCTATTCGATTGGTAGTTAATGCTTGTGCAAGCCGGGATCTTCATGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGACATCACAGCTCAGAAGACTGTCATGGACAAATTTACCCGAATTGAAGGTGATTACAAGGCGATTGTACAGAATCGGAACCCATTGATCCCCCCAATATTTGGAACTGATGTGTTTGGTTGGTGTTGTGAGTGGAATGCGGCCATGACAAAGGTGACAGGATGGAAGAGAGAAGAGGTAATGGATAAGATGCTTTTAGGGGAGGTTTTTGGGACCCAGATGGCTTGTTGTCGTCTTAAGAACCAAGAAGCTTTCGTTAATTTTGGTATTGTACTTAATAAAGCCATGACCGGTTTGGAGACAGAGAAGGTTGCCTTTGGTTTCTTTGCTAGGAGTGGGAAGTATGTAGAATGCCTGCTTTCGGTGAGTAAAAAATTGGATGTCGATGGTGTGGTTACCGGGGTTTTCTGCTTCTTGCAGCTAGCTAGTCCAGAGTTGCAGAAAGCATTGCATGTTCAGCGGNNNNNNNNNNAGACTGAAAGCTTTAACTTATATGAAGAGGCAGATCAGGAATCCTTTATCTGGGATAATGTTTTCGCGGAAAATGTTGGAGGGCACTGA 2757 0.4356 MSSSRPSQSSSNSGRSRHSARIIAQTTVDAKIHASFEESGSSFDYSSSVRASGSADGENQPRTDKVTATYLHHIQKGKLIQPFGCLLALDEQTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVHLLNPILVHCKTSGKPFYAILHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDAMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFLKNKVRMIVDCHAKHVKVIQDEKLPFDLTLCGSTLRAPHSCHLQYMSNMDSIASLVMAVIVNDSDEDGDNSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLSQVFAIHVNKEIELEYQITEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGASLLYKDKVWRLGITPTESHIREIASWLTENHMDSTGLSTDSLLDAGFPGAFSLGDVVCGMAAVRITEKDIVFWFRSHTAAEIRWGGAKHDPSEKDDGRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKETDRMDITTNAINTKLSDLRIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLSVGDAIGKHLLTLVENSSVGIVKKMLEMALHGEEEKNVQFEIKTHGSKADSGPIRLVVNACASRDLHDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDVFGWCCEWNAAMTKVTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGLETEKVAFGFFARSGKYVECLLSVSKKLDVDGVVTGVFCFLQLASPELQKALHVQRXXXXTESFNLYEEADQESFIWDNVFAENVGGH 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60428g00022 918 FunFam Phytochrome 613 744 - -
Stsc60428g00022 918 NCBIfam PAS domain S-box protein 624 740 IPR000014 -
Stsc60428g00022 918 ProSiteProfiles PAC domain profile. 690 746 IPR000700 -
Stsc60428g00022 918 CDD PAS 761 872 IPR000014 -
Stsc60428g00022 918 Gene3D PAS domain 611 748 - -
Stsc60428g00022 918 Gene3D PAS domain 74 321 - -
Stsc60428g00022 918 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Stsc60428g00022 918 SMART pas_2 619 685 IPR000014 -
Stsc60428g00022 918 SMART pas_2 749 818 IPR000014 -
Stsc60428g00022 918 Pfam GAF domain 218 401 IPR003018 GO:0005515
Stsc60428g00022 918 FunFam Phytochrome 406 538 - -
Stsc60428g00022 918 Gene3D PAS domain 763 875 - -
Stsc60428g00022 918 MobiDBLite consensus disorder prediction 1 23 - -
Stsc60428g00022 918 PANTHER OS08G0260000 PROTEIN 69 783 - -
Stsc60428g00022 918 Pfam PAS fold 70 185 IPR013654 GO:0006355
Stsc60428g00022 918 Pfam Phytochrome region 414 589 IPR013515 GO:0006355|GO:0009584
Stsc60428g00022 918 SUPERFAMILY GAF domain-like 409 588 - -
Stsc60428g00022 918 SMART gaf_1 218 411 IPR003018 GO:0005515
Stsc60428g00022 918 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Stsc60428g00022 918 Gene3D - 406 579 IPR043150 -
Stsc60428g00022 918 SUPERFAMILY GAF domain-like 198 398 - -
Stsc60428g00022 918 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Stsc60428g00022 918 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Stsc60428g00022 918 MobiDBLite consensus disorder prediction 1 26 - -
Stsc60428g00022 918 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Stsc60428g00022 918 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Stsc60428g00022 918 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Stsc60428g00022 918 CDD PAS 628 734 IPR000014 -
Stsc60428g00022 918 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Stsc60428g00022 918 Pfam PAS fold 620 734 IPR013767 GO:0006355
Stsc60428g00022 918 Pfam PAS fold 750 872 IPR013767 GO:0006355
Stsc60428g00022 918 Gene3D - 199 562 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60428g00022 Stsc-Chr60428 145842 150951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60428g00022 1 891 Histidine Kinase Gene Family AT1G09570 83.072 0.0 1557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60428g00022 K12120 - gmx:100790763 1572.37