Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60428g00019 ATGGGTATCAAGGGTTTAACGAAGCTTTTGGCGGACAATGCACCAAAATCCATGAAGGAGAATAAATTCGAGAGCTACTTTGGCCGCAAGATCGCCATTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTTGTGGGAAGAATTGGAACTGAAATGCTCACTAATGAAGCCGGTGAAGTGACTAGTCATTTGCAAGGCATGTTTACAAGGACTATCAGACTTCTTGAAGCTGGGATGAAGCCAGTATATGTTTTTGATGGGCCACCACCAGATTTGAAGAAGAAAGAGCTAGCAAAACGTTTGTCGAGGAGGGCTGAGGCTACTGAAGATTTATCTGAAGCCAAGGAGACAGCCAATAAGGAAGACATTGAAAAATTCAGCAAACGGACTGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAAGCTTTTAAGACTCATGGGAGTGCCCGTCGTTGAGGCACCTTCAGAAGCAGAGGCTCAGTGTGCTTCTCTTTGCAAAAGTGGAAAGGTTTATGCTGTAGCTTCAGAAGATATGGATTCTTTAACATTTGGAGCTACCAAATTTCTTCGCCATTTAATGGATCCCAGCTCCAAAAAGATTCCAGTGATGGAATTTGACATTGCCAAGGTTTTGGAGGACCTAGAATTGAGCATGGACCAATTTATTGACCTATGCATTCTTTCTGGGTGTGATTATTGTGAAAGCATCCGAGGGATTGGAGGAACAACAGCTTTGAAGCTCATACGTCAACACGGCTCTATCGAGAAGATTTTGGAGAACTTAAACAAAGAAAGGTACCAGATTCCGGATGATTGGCCATATGAGGAGGCCCGAAAGCTTTTTAAAGAACCACTGGTTGTAACTGAAGAAGAGCAACTTAATCTGAAGTGGTCTGCTCCAGATGAAGAAGGGTTAGTAAAATTTCTGGTAAATGAGAACGGATTCAACATTGATAGGGTGACAAAGGCAATTGAAAAAATTAAAGCGGCAAAAAACAAGTCATCACAAGGCCGGTTGGAATCATTTTTTAAGCCTACAACAAATCCATCTGTTCCTATTAAACGGAAGGGAAGCAAATGCATGCTTAAATCTTTCAAACCAGATATTGAGCATAAGATGTTCTCTCTGCAACCATTTAACTGTTCAAGGCCCATGGTTAGTGGCAAGTTAAGCTTGCCAAAACATAAGATGGGTTCCAAGCACCATGTGCCATTGTCATTGTTTAGAGGCGTCTGCTTTGGTGCCTGA 1257 0.4224 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRIGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPVYVFDGPPPDLKKKELAKRLSRRAEATEDLSEAKETANKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCASLCKSGKVYAVASEDMDSLTFGATKFLRHLMDPSSKKIPVMEFDIAKVLEDLELSMDQFIDLCILSGCDYCESIRGIGGTTALKLIRQHGSIEKILENLNKERYQIPDDWPYEEARKLFKEPLVVTEEEQLNLKWSAPDEEGLVKFLVNENGFNIDRVTKAIEKIKAAKNKSSQGRLESFFKPTTNPSVPIKRKGSKCMLKSFKPDIEHKMFSLQPFNCSRPMVSGKLSLPKHKMGSKHHVPLSLFRGVCFGA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60428g00019 418 Coils Coil 105 125 - -
Stsc60428g00019 418 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Stsc60428g00019 418 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Stsc60428g00019 418 Gene3D - 2 218 - -
Stsc60428g00019 418 SMART xpgineu 147 219 IPR006086 GO:0004518
Stsc60428g00019 418 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Stsc60428g00019 418 CDD PIN_FEN1 4 332 - -
Stsc60428g00019 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Stsc60428g00019 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Stsc60428g00019 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Stsc60428g00019 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Stsc60428g00019 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Stsc60428g00019 418 FunFam Flap endonuclease 1 10 222 - -
Stsc60428g00019 418 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Stsc60428g00019 418 Gene3D - 219 286 - -
Stsc60428g00019 418 CDD H3TH_FEN1-Euk 222 290 - -
Stsc60428g00019 418 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Stsc60428g00019 418 FunFam Flap endonuclease 1 219 286 - -
Stsc60428g00019 418 SMART xpgn3 1 108 IPR006085 GO:0004518
Stsc60428g00019 418 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Stsc60428g00019 418 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 368 IPR006084 -
Stsc60428g00019 418 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60428g00019 Stsc-Chr60428 122532 128199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60428g00019 1 382 Core DNA Replication Machinery Family AT5G26680 82.723 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60428g00019 K04799 - cave:132187694 672.93