Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60428g00004 ATGTCTTTCAAGTGTACTTACAAGGAAAAGAAAAAGAAAAAACTCTTCACCAAACCCGACAATGGCAACGAAGATCTCTTCCTCCACTGGTCTTCCATCAGATCCGACTATCACCGCACTCTCCACAAAGGCGATCGTGTCCAGTTCTCCATCGCCACCGGCAACAATCACAAGACAAAGGCCATTGATGTAATTGCTCCCGACGACAATCCCCTACACTCTCGTCCCAAGAAATCCGGCGGAGATGGAGGGAGGAAGGAAAAGGGTGAGGAGATTGCAGACAAAGAAAAGACGGCGACGCAATGA 306 0.4869 MSFKCTYKEKKKKKLFTKPDNGNEDLFLHWSSIRSDYHRTLHKGDRVQFSIATGNNHKTKAIDVIAPDDNPLHSRPKKSGGDGGRKEKGEEIADKEKTATQ 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60428g00004 101 SUPERFAMILY Nucleic acid-binding proteins 16 71 IPR012340 -
Stsc60428g00004 101 PANTHER COLD SHOCK DOMAIN PROTEIN 2 16 90 - -
Stsc60428g00004 101 MobiDBLite consensus disorder prediction 65 101 - -
Stsc60428g00004 101 Gene3D - 5 80 IPR012340 -
Stsc60428g00004 101 Pfam 'Cold-shock' DNA-binding domain 10 66 IPR002059 GO:0003676
Stsc60428g00004 101 MobiDBLite consensus disorder prediction 70 101 - -
Stsc60428g00004 101 ProSiteProfiles Cold-shock (CSD) domain profile. 1 66 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60428g00004 Stsc-Chr60428 17541 18270 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc60428g00004 CSD 1.2e-12 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60428g00004 - K09250 gmx:106796585 81.2629