Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60428g00004 | ATGTCTTTCAAGTGTACTTACAAGGAAAAGAAAAAGAAAAAACTCTTCACCAAACCCGACAATGGCAACGAAGATCTCTTCCTCCACTGGTCTTCCATCAGATCCGACTATCACCGCACTCTCCACAAAGGCGATCGTGTCCAGTTCTCCATCGCCACCGGCAACAATCACAAGACAAAGGCCATTGATGTAATTGCTCCCGACGACAATCCCCTACACTCTCGTCCCAAGAAATCCGGCGGAGATGGAGGGAGGAAGGAAAAGGGTGAGGAGATTGCAGACAAAGAAAAGACGGCGACGCAATGA | 306 | 0.4869 | MSFKCTYKEKKKKKLFTKPDNGNEDLFLHWSSIRSDYHRTLHKGDRVQFSIATGNNHKTKAIDVIAPDDNPLHSRPKKSGGDGGRKEKGEEIADKEKTATQ | 101 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60428g00004 | 101 | SUPERFAMILY | Nucleic acid-binding proteins | 16 | 71 | IPR012340 | - | |
Stsc60428g00004 | 101 | PANTHER | COLD SHOCK DOMAIN PROTEIN 2 | 16 | 90 | - | - | |
Stsc60428g00004 | 101 | MobiDBLite | consensus disorder prediction | 65 | 101 | - | - | |
Stsc60428g00004 | 101 | Gene3D | - | 5 | 80 | IPR012340 | - | |
Stsc60428g00004 | 101 | Pfam | 'Cold-shock' DNA-binding domain | 10 | 66 | IPR002059 | GO:0003676 | |
Stsc60428g00004 | 101 | MobiDBLite | consensus disorder prediction | 70 | 101 | - | - | |
Stsc60428g00004 | 101 | ProSiteProfiles | Cold-shock (CSD) domain profile. | 1 | 66 | IPR002059 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60428g00004 | Stsc-Chr60428 | 17541 | 18270 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | CSD | Stsc60428g00004 | CSD | 1.2e-12 | CL0021 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60428g00004 | - | K09250 | gmx:106796585 | 81.2629 |