Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60427g00037 ATGAAACCTGTTTTTGTGATTCTCCTAATCTTTGTTGTGGCTCCTACAAGGTCTTTTTCAGCATCATCATCATCTCCCACCATTTCCCATAGCAGCAACAACTCTGCATGCCCAGTGGGAATGGATTATGTGCTAACAGTCCCTTGGAACTCCTCTAGCTGCCATAACTTCCAAGCCTTCCCATCCAAAAACAAAACACGCTCAAGTTTTTGTTGCACAACTCTGTTAGCACTAGCTCAAAACCTCAAAGAAAATTCTCTTTTCCAGCTCCCGAATCTTCCCACCTCAAAATCCTGCCTTCATGACTTCCAATCCAAGCTCAATTCTCTCTCACTTCCAAACAACCTTGTTTCCTCTTGCTTTGACCCGCTTCAGTTTGTTATCAGTCCCAATATATGCGCTCACATCCAATCTAAGCAAGACTGGATCAACATTCTTGGTCCTACAACTCAGTTCAATAATGCATGTAAGCCAGACCTCAGTGTTTCTGCCAATTGTGATGTTTGTGTCACAGAAGATCTAAATCTTCTGCAAAAGATGAATGCTATTGATGGAAATGCTTCTCATTCTCAAGATTGTTTTTACTTCTCAATTCTATATGCTGCTGGAATTGCAAACGAGCTTGGCCCCGAAAGCAGAGGTGCTTTGTCTTGTATTTTTGAGCTGCCACTTAATAATGCTCAAGTGAGAGGTGCCAGAAGAAAGAGCCATAAACATACTCTTATTTTTTGTTTAATTGGAGCTTCAATTGGAATCTTTGCCGTCCTGTCTTTCTTGATAGGTTTGCGTCTATGGTATAACAGGTTGGGGACGAGAAAAGGTGCTGAGAATTTGTATGTCTATGCTGAACCTACAGCGCAAGGGTCTAGGTCTCGAGTGAAACCAAATACAGGGTCAATTTGGTTCAAGTTTGAGGACCTAGTGAAGGCCACTAACAATTTTTCACCCCAGAACTTCATTGGCAGAGGTGGTTTTGGCTTAGTTTACAAGGGCATTCTACCTGATGGCACAATGGTTGCAGTTAAAAGGATAGAAGAATCAGCTTCTCAAGGAGATGAGGAATTCTACAGGGAGGTGGAGATTATCAGCAACTTGAAGCACCGCAATCTAGTGCGGCTAAGAGGGTGTTGTGTGGTTGATGAAGGAGAAGAAGAAGCAGAAGAGGAGGATCCCAGGCACAAAGAAAGCCAAAAGTATCTTGTTTATGATTACATGCCAAATGGTAGCCTTGAAGACCATCTCTTTTCTTCCATGGACAACCAAAATGCAAAGAAATCGCTTACTTGGTCTCAAAGAAAGAGCATAATCTTGGATGTAGCAAATGGTTTGGTGTATTTGCACTTTGGAGTTAAACCTGCAATCTATCACAGAGATATCAAAGCCACCAATATACTGCTTGATGCAGGTATGAATGCAAGAGTTGCGGATTTCGGTCTAGCCAGACAAAACATTGAAAGTAGGTCTCAGTTAAATACAAGAGTTGCTGGAACTCATGGATACCTAGCACCAGAATATGCACGTTATGGCCAATTATCTGAAAAGAGTGATGTCTATAGCTTTGGTGTGGTTATATTGGAAATATTGTGTGGAAGAAAAGCTCTTGATTTATCTTCATCTGGCACACCTGCGTTCTTTATCTCAGATTGGGTTTGGTCATTGCTGAAATCTGCTGATTCAAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGGGATATTGAGATTCCACCAATTCCAGATAGGCCAATGGCTCTTGGTCACCATGAGTTTCCCATGGTTATTCAGAAAAGTGAAAACCAAGATGTATAA 1812 0.4156 MKPVFVILLIFVVAPTRSFSASSSSPTISHSSNNSACPVGMDYVLTVPWNSSSCHNFQAFPSKNKTRSSFCCTTLLALAQNLKENSLFQLPNLPTSKSCLHDFQSKLNSLSLPNNLVSSCFDPLQFVISPNICAHIQSKQDWINILGPTTQFNNACKPDLSVSANCDVCVTEDLNLLQKMNAIDGNASHSQDCFYFSILYAAGIANELGPESRGALSCIFELPLNNAQVRGARRKSHKHTLIFCLIGASIGIFAVLSFLIGLRLWYNRLGTRKGAENLYVYAEPTAQGSRSRVKPNTGSIWFKFEDLVKATNNFSPQNFIGRGGFGLVYKGILPDGTMVAVKRIEESASQGDEEFYREVEIISNLKHRNLVRLRGCCVVDEGEEEAEEEDPRHKESQKYLVYDYMPNGSLEDHLFSSMDNQNAKKSLTWSQRKSIILDVANGLVYLHFGVKPAIYHRDIKATNILLDAGMNARVADFGLARQNIESRSQLNTRVAGTHGYLAPEYARYGQLSEKSDVYSFGVVILEILCGRKALDLSSSGTPAFFISDWVWSLLKSADSRPTILDALKMLEGDIEIPPIPDRPMALGHHEFPMVIQKSENQDV 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60427g00037 603 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 556 - -
Stsc60427g00037 603 Gene3D Transferase(Phosphotransferase) domain 1 405 576 - -
Stsc60427g00037 603 SMART serkin_6 314 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60427g00037 603 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 405 559 - -
Stsc60427g00037 603 Pfam Protein kinase domain 317 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60427g00037 603 SUPERFAMILY Protein kinase-like (PK-like) 292 571 IPR011009 -
Stsc60427g00037 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Stsc60427g00037 603 FunFam Receptor-like serine/threonine-protein kinase At4g25390 280 404 - -
Stsc60427g00037 603 Gene3D Phosphorylase Kinase; domain 1 282 404 - -
Stsc60427g00037 603 Pfam SPARK 32 194 IPR043891 -
Stsc60427g00037 603 ProSiteProfiles Protein kinase domain profile. 314 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60427g00037 603 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60427g00037 Stsc-Chr60427 221820 223740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60427g00037 32 593 Receptor kinase-like Gene Family AT1G11050 52.874 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Stsc60427g00037 Pkinase 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60427g00037 - - gmx:100788367 691.804