Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60427g00033 ATGGATAATAATAATAATCATGATAAAGAACAAGTTTTCTTACATGGTGACTTGGATATTTATGTGATAGAAGCAAAATCTCTTCCAAACTTGGATCTTTCTTCTGAAGCAGTTAGAAGATGCCTCAGCGTGGGAAGCTTCTTAACAGCACCATTCTCAAGGAAAATCAAGCGTTCAGGGAAAGATAAGATGATAACAAGTGATCCTTATGTCTCTGTAGTTATAGCAGGTGCTACCATAGCTCAAACTAGAGTGATCCCAAACTGCGAAAACCCTCTTTGGGACGAGCATTTCATCATGCCGGTTGCTCACCCTGCTCACAAGATTGAGTTCATTGTGAAGGACAATGATGTTCTTGGTGCTGAGTTGATTGGTGTAGTTGAGATTCCTGTTCAGAAGGTAGTCTCAGGAGAAAGCATAGATGATTGGTTTCCGATCATCGGTCAGTATTCGAATTGCCTTCAGGCTTATCCAGCCCTGGATGTTTCAATCATGTTTTGGCCGGTTGGCGGCGATAAGGACGATGTTTGTAGTGGTAATACCGGAGTTCCCAAGACATATTTTCCATTAAGGAAAGGAGGGAATGTGACTCTGTATCAAGATGCTCATGTTCCTGATGGAATGCTACCTGAGATTCAATTGGAGGGTGGGAAAGTGTATCAAGCTGGTAAATGTTGGGAGGATATTTGCCATGCAATTTTGGAAGCTCATCATCTGATATATATTGTAGGTTGGTCAGTTTATCATCCAATAAGTCTTGTTAGAGAGCCAACAAGGCCATTGCCTCCTGGTGGAGAGCTTACACTTGGAGAGTTGTTGAAGTACAAGTCTCAAGAAGGTCTTAGAGTGGTTATGCTCATTTGGGATGACAGAACTTCACATGACAAGTTTCTTATCAAAACAGTTGTAGGAACCCTCTTTACTCATCATCAGAAATGTGTGCTTGTTGACACACAAGGTTCAGGGAATAATAGGAAAATATCTGCTTTTATTGGTGGTCTAGATCTCTGTGATGGCAGATATGACACACCTCAGCATAGGCTTTTTCGCGAAGTAGAAACCATCTTCAAGGAGGATTTTCATAATCCTACATTTCAAGTAGGTTCTAGTGGAGGTGGACCAAGAGAGCCATGGCATGACATGCATTGCAAGGTTGAAGGGCCAGCTGCTTATGATATATTAACCAATTTTGAACAAAGATGGAAGAAAGCGAAAAAATGGCGAGACTTTAGACTCAATAAGGTCACGAATTGGCATGACGATGCATTGCTAAGGTTAGACCGGATATCATGGATAGCCAGTCCATCTCCTAGCTCTGATGATGATAAAGCTATCCAGGTGACCGACGAAAATGATCCTGAAACTTGGAATGTGCAGGTATTTCGGTCCATAGATTCAGGATCTGTGAAGGGTTTTCCAAAGGATTTCAACAAGGCTCAGGCTCAGAATCTTTTATATGGAAAGAATTTAAAAGTAGACCAAAGCATTCATACTGCTTATGTAAAAGCAATAAGATCAGCTCAACACTTTATTTACATTGAGAATCAGTATTTTCTGGGCTCATCATATCATTGGCCTTCATATGAAAAAGCAGGTGCAAATCACTTGATTCCAATGGAGTTGGCCTTGAAGATTTCTAGCAAAATCCGAGCGAACGAACGTTTCGCTGTATATGTAGTTATACCAATGTGGCCAGAGGGGGTTCCAACAAGTAATGCTGTTCAGGAAATCTTATTCTGGCAGGGGCAAACAATGGCAATGATGTACAAGATTATTGCAGATGCACTTAAAGATGCTGGAGTCAACAATATATATCATCCACATGATTTTCTCAATTTTTTCTGCCTTGGAAATAGAGAACCTGAGGCCTCACCAACTCCATCACCACATAAGGAATCGTCCGAAAACCGTGGTTTGGGATCAGTCAAGAAATTCAAACGTTTCATGATTTATGTTCATGCTAAAGGAATGATAGTTGATGATCAATACGTGATCATTGGATCAGCAAACATTAACCAGAGATCAATGGATGGTTCAAGAGACACAGAAATAGCCATGGGTGCTTATCAACCAAAATATACTTGGAAAGAAAAAAAATCCCATCCACGTGGCCAGGTGTATGGATACCGGATGTCACTGTGGGCCGAGCACCTTGGCGGTCTGGACTACAGATTCGCAGAGCCGCACAGCGTGGATTGTATGAGGGCTATGAACAACATAGCCAGACAAAACTGGAACACATATTCATCAGATAGAATAAGTCATATGCAAGGGCACTTGATGTTGTACCCAGTTCAGGTTGGCAGGGATGGAAAAGTTAGTGCACTTGATGATCATGATTCATTTCCTGATGTTGGTGGCAAGATTCTTGGAGCAGCAAATTCTCTTCCGGATACCCTAACCACATGA 2409 0.4151 MDNNNNHDKEQVFLHGDLDIYVIEAKSLPNLDLSSEAVRRCLSVGSFLTAPFSRKIKRSGKDKMITSDPYVSVVIAGATIAQTRVIPNCENPLWDEHFIMPVAHPAHKIEFIVKDNDVLGAELIGVVEIPVQKVVSGESIDDWFPIIGQYSNCLQAYPALDVSIMFWPVGGDKDDVCSGNTGVPKTYFPLRKGGNVTLYQDAHVPDGMLPEIQLEGGKVYQAGKCWEDICHAILEAHHLIYIVGWSVYHPISLVREPTRPLPPGGELTLGELLKYKSQEGLRVVMLIWDDRTSHDKFLIKTVVGTLFTHHQKCVLVDTQGSGNNRKISAFIGGLDLCDGRYDTPQHRLFREVETIFKEDFHNPTFQVGSSGGGPREPWHDMHCKVEGPAAYDILTNFEQRWKKAKKWRDFRLNKVTNWHDDALLRLDRISWIASPSPSSDDDKAIQVTDENDPETWNVQVFRSIDSGSVKGFPKDFNKAQAQNLLYGKNLKVDQSIHTAYVKAIRSAQHFIYIENQYFLGSSYHWPSYEKAGANHLIPMELALKISSKIRANERFAVYVVIPMWPEGVPTSNAVQEILFWQGQTMAMMYKIIADALKDAGVNNIYHPHDFLNFFCLGNREPEASPTPSPHKESSENRGLGSVKKFKRFMIYVHAKGMIVDDQYVIIGSANINQRSMDGSRDTEIAMGAYQPKYTWKEKKSHPRGQVYGYRMSLWAEHLGGLDYRFAEPHSVDCMRAMNNIARQNWNTYSSDRISHMQGHLMLYPVQVGRDGKVSALDDHDSFPDVGGKILGAANSLPDTLTT 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60427g00033 802 PIRSF PLD_plant 296 802 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc60427g00033 802 PIRSF PLD_plant 3 302 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc60427g00033 802 Gene3D Endonuclease Chain A 215 423 - -
Stsc60427g00033 802 Gene3D C2 domain 12 155 IPR035892 -
Stsc60427g00033 802 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 648 675 IPR001736 GO:0003824
Stsc60427g00033 802 Pfam PLD-like domain 642 684 IPR025202 -
Stsc60427g00033 802 Pfam Phospholipase D C terminal 724 792 IPR024632 -
Stsc60427g00033 802 SMART C2_3c 17 143 IPR000008 -
Stsc60427g00033 802 Pfam Phospholipase D Active site motif 306 340 IPR001736 GO:0003824
Stsc60427g00033 802 SUPERFAMILY Phospholipase D/nuclease 494 718 - -
Stsc60427g00033 802 CDD C2_plant_PLD 12 166 - -
Stsc60427g00033 802 Gene3D Endonuclease Chain A 445 701 - -
Stsc60427g00033 802 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 305 340 IPR001736 GO:0003824
Stsc60427g00033 802 SMART pld_4 648 675 IPR001736 GO:0003824
Stsc60427g00033 802 SMART pld_4 305 340 IPR001736 GO:0003824
Stsc60427g00033 802 Pfam C2 domain 16 146 IPR000008 -
Stsc60427g00033 802 PANTHER PHOSPHOLIPASE D 300 791 IPR015679 -
Stsc60427g00033 802 ProSiteProfiles C2 domain profile. 1 144 IPR000008 -
Stsc60427g00033 802 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 165 IPR035892 -
Stsc60427g00033 802 SUPERFAMILY Phospholipase D/nuclease 183 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60427g00033 Stsc-Chr60427 200147 203583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60427g00033 13 801 Phospholipase D Gene Family (Wang group) AT4G11850 51.905 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60427g00033 K01115 - gmx:100779740 1275.38