Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60427g00029 ATGCTCTTAAGATGGGTTAGAGAGGATGCCTTGAAGGCATTGCAGGAAAAGGCAAAAGAACCAGCAGTGCCTGAACCAGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTACGAAGGATGTGGAAAGACGTTCATAGATGCCGGTGCATTGAGGAAACATTCTCACATTCATGGAGAGAGACAATTTGTTTGTCACTATGAGGGGTGTGGAAAGGCCTTCTCGCTGGATTTCAACCTAAGGTCTCACATGAAAACACATTCGCAAGAGAACTATCATATCTGTCCATACCCAGATTGCGGGAAGAGATACGCTCACGAATACAAGCTAAAGAATCACATTGCCTCTCACCATGAAAAGAACGCAGCAGTAGAGGTGCCGAAGTATACTCCACCTTTGGAAAGACAACCAAAAGCTATTAAACATTCCGGTGCGGCATATGGTTCTGCATCGTCAGATCGCCCCTATGCATGCCCTTATGAAGGTTGTGAAAAAGCCTATATTCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAACATCCTGGGCATATGTTTGATGAAAATGCAGAGCATGCTCACGCTAATGTTGATAATGAAATGGATGAAGCAAGCGATCAAGATGCCTATGGGGTGAAACGATCAAATGGTAAAATTCAGAAGCAAAGTAAGCCAAAACCAAACCTTAAGTTGCCTCCTCCTCCCAAAATCGCCAAACGGAAAGCACCACCGCATGCTCCTGCCACAATAGCTGTAACAAAAAAACCTTGGCCTGGGAAAGAGGAGGCTTATGACGAAGAAGACAGCGAAGAAACAGAAGAGGATCGCGACAATGTTGAAGATGGTTGGAGATATGGTGGCAACAATGACGACGACGATGATGAAGAAACAGAATATGAAGACTGA 912 0.4441 MLLRWVREDALKALQEKAKEPAVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPKYTPPLERQPKAIKHSGAAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMFDENAEHAHANVDNEMDEASDQDAYGVKRSNGKIQKQSKPKPNLKLPPPPKIAKRKAPPHAPATIAVTKKPWPGKEEAYDEEDSEETEEDRDNVEDGWRYGGNNDDDDDEETEYED 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60427g00029 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 124 IPR013087 -
Stsc60427g00029 303 SMART c2h2final6 36 60 IPR013087 -
Stsc60427g00029 303 SMART c2h2final6 65 89 IPR013087 -
Stsc60427g00029 303 SMART c2h2final6 95 119 IPR013087 -
Stsc60427g00029 303 SMART c2h2final6 158 183 IPR013087 -
Stsc60427g00029 303 Gene3D Classic Zinc Finger 36 61 - -
Stsc60427g00029 303 MobiDBLite consensus disorder prediction 289 303 - -
Stsc60427g00029 303 MobiDBLite consensus disorder prediction 265 279 - -
Stsc60427g00029 303 SUPERFAMILY beta-beta-alpha zinc fingers 39 89 IPR036236 -
Stsc60427g00029 303 SUPERFAMILY beta-beta-alpha zinc fingers 153 181 IPR036236 -
Stsc60427g00029 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 65 IPR013087 -
Stsc60427g00029 303 FunFam zinc finger transcription factor YY1 92 123 - -
Stsc60427g00029 303 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 77 - -
Stsc60427g00029 303 FunFam Zinc finger protein 410 63 90 - -
Stsc60427g00029 303 ProSitePatterns Zinc finger C2H2 type domain signature. 97 120 IPR013087 -
Stsc60427g00029 303 Pfam Zinc finger, C2H2 type 95 119 IPR013087 -
Stsc60427g00029 303 Pfam Zinc finger, C2H2 type 65 89 IPR013087 -
Stsc60427g00029 303 FunFam zinc finger transcription factor YY1 36 61 - -
Stsc60427g00029 303 Gene3D Classic Zinc Finger 94 124 - -
Stsc60427g00029 303 Gene3D Classic Zinc Finger 62 93 - -
Stsc60427g00029 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 94 IPR013087 -
Stsc60427g00029 303 ProSitePatterns Zinc finger C2H2 type domain signature. 67 89 IPR013087 -
Stsc60427g00029 303 MobiDBLite consensus disorder prediction 229 243 - -
Stsc60427g00029 303 SUPERFAMILY beta-beta-alpha zinc fingers 75 121 IPR036236 -
Stsc60427g00029 303 ProSitePatterns Zinc finger C2H2 type domain signature. 38 60 IPR013087 -
Stsc60427g00029 303 MobiDBLite consensus disorder prediction 203 303 - -
Stsc60427g00029 303 Gene3D Classic Zinc Finger 136 200 - -
Stsc60427g00029 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 188 IPR013087 -
Stsc60427g00029 303 FunFam Zinc finger transcription factor YY1 133 200 - -
Stsc60427g00029 303 ProSitePatterns Zinc finger C2H2 type domain signature. 160 183 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60427g00029 Stsc-Chr60427 178092 180015 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60427g00029 8 288 C2H2 Transcription Factor Family AT4G06634 59.146 7.96e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60427g00029 zf-C2H2 0.0068 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60427g00029 - - qsa:O6P43_031492 414.846